Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0512 ATGGATATTGAGACACTGCTCAAAGAAACCTTTCTCCCACAGCCCTTACAAGAAAGCTGTATGAAAGATATGATTCCTTTGGGAAATCCTTCATTGCAAGAATGCTTGCAAGATTTTCACCAAATTGATCAGTTTCACTTCAATGTGCCCTCATCCAATAATTCAATAATCCAGACCCCAACTTTTGATGCTTTTGACAATTTCACCTTTACAGGTTCATCACCTGCTTTAGATTACGAGAGCAAGCCTTTTACTGATAATTTCCTTTATGGAAATTATAACTTGATTCTCCCTCAAAGGAATGTTGAACTAGATATGATGGTTACAGATCAAAGCTTTTTGCCTTTTACTCCTCAAGAAATCAAACCCTCCAATGTTGTTTTGCCAGATCAAGTTTCGATGAATTATTACAAAACAATTGGCGTTAACAAAAATAATAAATCCTATCCAACCACTCCAAGAACGTACAAAGTTCGCAAGAAGTCCAACACAGTAAAGGGGCATTGGACAATAGAAGAAGATGGATTATTGATTCAACTGGTGGAACAATACGGATTGAGGAAGTGGTCTCATATTGCTAAGCTACTGCCTGGAAGAATTGGAAAACAGTGCAGAGAGAGATGGCATAACCATCTAAGGCCTGATATTAAGAAGGACACATGGAATAGTGAAGAGGATAAAATACTGATAGAAGCTCATGCTGAGGTAGGAAACAAATGGGCAGAGATTGCGAAAAGGTTGCCTGGAAGAACTGAGAACTCAATCAAAAACCACTGGAATGCAACCAAGAGAAGGCAATATTCCAAAAGAAAGTGCAGATCCAAGTACCCCAGAGGCACTCTTCTGCAAGAGTATATCAAGAGCTTGAACTTAGACAAGAACCCTCCAATAGATTATAGGAGAAAATCTGCTGTGAACAATGCTATCAAAACCAGCACAAGCAAATCCACTGCACCTGCTTTGCCCCAGACTGCTTCTCAATTTTCTGCCATTGAAAGCATGGCACCAGATGCTGTGCCTTGTGTTCCTTTCAGGGATAACAATGAAGGAAAATTTCAATGTGATCCTATGATGGAGGGAATGCAGCATTGCGAATATGGAGGAATAGAGTGTTTTGCAGCTGTTAATGGAGATGAGAATCATGCTGAGACTGATATGCAACCAGAGATGCTGGAAGTTGAAGTTAAGAAGGAGCTGGATTTGGTTGAGATGATCTCTCAGATTAATAGTGAAACTTTTCATGTTTAA 1248 0.395 MDIETLLKETFLPQPLQESCMKDMIPLGNPSLQECLQDFHQIDQFHFNVPSSNNSIIQTPTFDAFDNFTFTGSSPALDYESKPFTDNFLYGNYNLILPQRNVELDMMVTDQSFLPFTPQEIKPSNVVLPDQVSMNYYKTIGVNKNNKSYPTTPRTYKVRKKSNTVKGHWTIEEDGLLIQLVEQYGLRKWSHIAKLLPGRIGKQCRERWHNHLRPDIKKDTWNSEEDKILIEAHAEVGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKCRSKYPRGTLLQEYIKSLNLDKNPPIDYRRKSAVNNAIKTSTSKSTAPALPQTASQFSAIESMAPDAVPCVPFRDNNEGKFQCDPMMEGMQHCEYGGIECFAAVNGDENHAETDMQPEMLEVEVKKELDLVEMISQINSETFHV* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0512 415 PANTHER MYB PROTEIN-RELATED 106 291 - -
Vra5g0512 415 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 217 267 IPR017930 -
Vra5g0512 415 PANTHER BNAC03G62830D PROTEIN 106 291 - -
Vra5g0512 415 SUPERFAMILY Homeodomain-like 164 259 IPR009057 -
Vra5g0512 415 ProSiteProfiles Myb-like domain profile. 213 263 IPR001005 -
Vra5g0512 415 Gene3D - 220 279 - -
Vra5g0512 415 ProSiteProfiles Myb-like domain profile. 161 212 IPR001005 -
Vra5g0512 415 SMART sant 165 214 IPR001005 -
Vra5g0512 415 SMART sant 217 265 IPR001005 -
Vra5g0512 415 Gene3D - 165 217 - -
Vra5g0512 415 CDD SANT 220 263 IPR001005 -
Vra5g0512 415 Pfam Myb-like DNA-binding domain 169 226 - -
Vra5g0512 415 CDD SANT 169 212 IPR001005 -
Vra5g0512 415 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 161 216 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0512 Vra-Chr5 6153889 6155687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0512 105 291 MYB Transcription Factor Family AT4G18770 63.500 2.54e-81 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra5g0512 Myb_DNA-bind_6 7.9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0512 K09422 - gmx:102662267 552.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0512 5 6153889 6155687 Vra5g0512 5 6153889 6155687 ECH