Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0500 ATGAAGAACTTGAGGTGGCACAAGCAAATTTCCAACAGTGGCAAGTTGGGGAGAAGGCTTTCACTTGGGGAGTACAACCGCGCAGTGTCATGGTCTAAGTATCTGGTGTCTCCGGGGGCTGAGATAAAGGGAGAAGGAGAAGAAGAATGGAGTGCAGATATGTCTCAGTTGCTCATTGGATCCAAATTTGCCTCTGGCAGGCACAGCAGAATCTACAGAGGGGTTTACAAGCAAAAAGATGTGGCAATTAAGCTCGTTAGTCAACCGGAGGAGGATGAGGACTTGGCTGCTTTTCTTGAGAAGCAATTCACTTCTGAGGTTTCTTTGCTCCTTCGATTAGGCCACCCAAATATCATTACTTTTATTGCTGCTTGCAAGAAACCTCCTGTGTTTTGCATAATCACTGAATATTTGGCTGGAGGTTCACTGGGAAAATTCCTGCACCACCAGCAACCAGATATACTTCCACACAAACTTGTTCTGAAGTTAGCCCTTGACATTGCACGGGGGATGCAATATCTTCATTCTCAAGGGATTCTTCATAGGGATCTCAAATCAGAGAATCTCCTCTTGGGGGAAGACATGTGTGTAAAGGTAGCAGATTTTGGTATCTCATGCTTAGAATCTCAGTGTGGCAGTGCAAAAGGATTCACCGGAACATACCGTTGGATGGCGCCCGAAATGATCAAAGAAAAGCATCATACCAAGAAAGTAGATGTGTATAGTTTTGGCATAGTTCTATGGGAGCTTTTGACAGGAAAAACACCATTTGACAACATGACTCCAGAGCAGGCAGCATATGCAGTTTCCCACAAGAATGCAAGACCACCATTGCCATGTGAGTGTCCTTGGGCATTTAGTGATCTGATCAATAGATGCTGGTCAAGCAACCCAGATAAGAGGCCTCATTTTGATGAGATAGTTTCCATTTTGGAGTTCTACACAGAATCGCTTGATCAGGATTCAGAGTTTTTGTCAACTTACAAACCAAGACCTAGTAGTAGTAATAGTAGTAACACCATTCTTGGGTGCCTCCCAAAATGCAATGCACGCCATAAATTTGGTGCCTGCAAAGCTTAG 1080 0.4417 MKNLRWHKQISNSGKLGRRLSLGEYNRAVSWSKYLVSPGAEIKGEGEEEWSADMSQLLIGSKFASGRHSRIYRGVYKQKDVAIKLVSQPEEDEDLAAFLEKQFTSEVSLLLRLGHPNIITFIAACKKPPVFCIITEYLAGGSLGKFLHHQQPDILPHKLVLKLALDIARGMQYLHSQGILHRDLKSENLLLGEDMCVKVADFGISCLESQCGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELLTGKTPFDNMTPEQAAYAVSHKNARPPLPCECPWAFSDLINRCWSSNPDKRPHFDEIVSILEFYTESLDQDSEFLSTYKPRPSSSNSSNTILGCLPKCNARHKFGACKA* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0500 359 Gene3D Transferase(Phosphotransferase) domain 1 140 341 - -
Vra5g0500 359 CDD STKc_MAP3K-like 64 311 - -
Vra5g0500 359 SMART serkin_6 57 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0500 359 Gene3D Phosphorylase Kinase; domain 1 47 138 - -
Vra5g0500 359 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Vra5g0500 359 PANTHER SERINE-THREONINE PROTEIN KINASE 1 333 - -
Vra5g0500 359 Pfam Protein tyrosine and serine/threonine kinase 59 311 IPR001245 GO:0004672|GO:0006468
Vra5g0500 359 PRINTS Tyrosine kinase catalytic domain signature 135 148 IPR001245 GO:0004672|GO:0006468
Vra5g0500 359 PRINTS Tyrosine kinase catalytic domain signature 173 191 IPR001245 GO:0004672|GO:0006468
Vra5g0500 359 PRINTS Tyrosine kinase catalytic domain signature 219 229 IPR001245 GO:0004672|GO:0006468
Vra5g0500 359 PRINTS Tyrosine kinase catalytic domain signature 238 260 IPR001245 GO:0004672|GO:0006468
Vra5g0500 359 PRINTS Tyrosine kinase catalytic domain signature 282 304 IPR001245 GO:0004672|GO:0006468
Vra5g0500 359 ProSiteProfiles Protein kinase domain profile. 57 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0500 359 SUPERFAMILY Protein kinase-like (PK-like) 46 313 IPR011009 -
Vra5g0500 359 PANTHER SERINE/THREONINE-KINASE HT1-LIKE PROTEIN 1 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0500 Vra-Chr5 5854103 5858741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0500 25 320 MAP Kinase Kinase Kinase AT1G62400 62.333 1.66e-133 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vra5g0500 PK_Tyr_Ser-Thr 3.6e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0500 - - gmx:100807757 703.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0500 5 5854103 5858741 Vra5g0500 5 5854103 5858741 ECH
Vra7g1640 7 34862444 34865669 Vra5g0500 5 5854103 5858741 PCT