Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0495 ATGAAGAAGAGATTAGCAGCAAGCACCATCGATGATTCCACTAAACTTGATCGCAAAACCATCGAAAGAAACCGCAGAATTCACATGAAATCCCTCTGCCATCAGCTTGCTTCTCTTATTCCTCCCAACCTCAAACCACCCAAATCCAAGCTGATGCTAGGGCAGCAGGACCAACTGGATCTCGCAGCAAGGTACATAAAACACATGAGAGAGAGAATAGAGAAATTGAAGAGGCAGAAGGAGCAAGCGATGTTGAACCAAAGCAGTGAAAGAAAAATGTTTGATAAAAACGATGAGACCAAGTTGCCAATACTTGAGCTAAGAGACTTGGGTTCCGGCATCGAAGTGATGCTGGTGAGTGGGTTGAACAAGACATTCATGTTGTACGAAGTAATCAGCGTTCTTGAGGAAGAAGGTGCTGAAGTTGTCACTGCAAGCTTCTCAACTGTCGGAGACAAGTTATTTTACGTTGTTCACGCTCAGGTTAAAATATCAAGAGTTGGCGTGGAGACGACAAGGGTAAAGGATAGACTTCAAGAATTTATTGCCCCATTAGAAATTTGGCCGGAAGACGTGTGA 579 0.4387 MKKRLAASTIDDSTKLDRKTIERNRRIHMKSLCHQLASLIPPNLKPPKSKLMLGQQDQLDLAARYIKHMRERIEKLKRQKEQAMLNQSSERKMFDKNDETKLPILELRDLGSGIEVMLVSGLNKTFMLYEVISVLEEEGAEVVTASFSTVGDKLFYVVHAQVKISRVGVETTRVKDRLQEFIAPLEIWPEDV* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0495 192 Gene3D - 7 98 IPR036638 GO:0046983
Vra5g0495 192 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 17 87 IPR036638 GO:0046983
Vra5g0495 192 PANTHER TRANSCRIPTION FACTOR BHLH162 13 183 - -
Vra5g0495 192 SMART finulus 19 75 IPR011598 GO:0046983
Vra5g0495 192 Pfam Helix-loop-helix DNA-binding domain 18 69 IPR011598 GO:0046983
Vra5g0495 192 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 13 183 IPR015660 GO:0003700|GO:0006357
Vra5g0495 192 Coils Coil 59 86 - -
Vra5g0495 192 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 13 69 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0495 Vra-Chr5 5693530 5694683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0495 6 182 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 33.862 9.33e-26 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra5g0495 HLH 6.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0495 - - gmx:100790403 311.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0495 5 5693530 5694683 Vra7g1644 7 34942032 34943547 ECH
Vra5g0495 5 5693530 5694683 Vra5g0495 5 5693530 5694683 ECH
Vra7g1644 7 34942032 34943547 Vra5g0495 5 5693530 5694683 PCT