Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0494 ATGGAGATTGTGATTTCTTTGATCATGTTGTTTGTGGGTATAGCGATTTTGGTGATTATCCATGTCTGCATCGTGGGGAGAGTCTTCAGAGGGAACAATACTGATGAAGAAGGTACTCAACAGAGGCAGAACATGAGTGGAATGAAAAGAATGTTGGGTGAAGACAACATTAGTGACCTCAAAAACCTTCCTTGCTTTGTGTACGAGGAGGCAGCAGCAGCATCAGCATCAGAAGAGAGAAGAGGGTTCAGCAGCTCAGTCGATTGTGCTGTTTGCTTGGAGAGTTTCAAGGTTGGTGATTTCTGCAGGTTGTTGCCCAATTGCAATCACACCTTCCATCTGCACTGTATAGACTCATGGATTCTCCACACACCCATCTGTCCCATTTGCAGAACATGGGTTCTTTCAGTAAGAGAACACCAAAGTTATGCTTCTGAGAATGTAGAAATTGTAACATCATAG 462 0.4351 MEIVISLIMLFVGIAILVIIHVCIVGRVFRGNNTDEEGTQQRQNMSGMKRMLGEDNISDLKNLPCFVYEEAAAASASEERRGFSSSVDCAVCLESFKVGDFCRLLPNCNHTFHLHCIDSWILHTPICPICRTWVLSVREHQSYASENVEIVTS* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0494 153 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 135 IPR013083 -
Vra5g0494 153 Pfam Ring finger domain 88 131 IPR001841 -
Vra5g0494 153 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 142 - -
Vra5g0494 153 SMART ring_2 89 130 IPR001841 -
Vra5g0494 153 ProSiteProfiles Zinc finger RING-type profile. 89 131 IPR001841 -
Vra5g0494 153 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 142 - -
Vra5g0494 153 SUPERFAMILY RING/U-box 88 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0494 Vra-Chr5 5679762 5680223 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0494 60 135 C3H Transcription Factor Family AT3G18930 48.101 3.30e-17 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0494 - - vra:106760242 305.834