Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0492 ATGAACAGCGATTTCTATCGACTCGCAGTTTCATCGCATTTCAGCAGTTTCCCGAAATCCTTCTCTCTGAGAAAGAAAGTGCCATGGTGGTACCAAATCCTAAACCCTCGATCCAAGTTCGTGGCCAGATGGAACCGCACCTTCCTCTATGTCTGCATCGCCGCGCTCTTCCTCGACCCTCTCTACTTCTATTTTCCCATCACGGGGGACAAGGCCTGCATGCAGACCGACCTCGTCCTCGGAGTCTTCGTCACCTTCTCCCGCACCGTGGCCGACCTCTTCTTCCTCTTCCACATGGTCCTCAAGTTCCGCACCGCCTATGTCGCTCCCACCTCTCGCGTTTATGGCCGCAAAGAACTCGTCACAGATCCTCGTGTCATCGCCTCACGCTACCTCAAATCTGATTTCATTATCGATCTCCTCGCAACCCTTCCTCTTCCTCAGATAGTGGTATGGTTCGTGATTCCAGCGGTGAAAAATTCTACTGTAGCTCATGTAAATCACACTCTATCTTTGATTGTGCTCATTCAATTCATTCCTAGATTATTTCAAATTTTTCCTCTGCAAAGGAGAATCTTGAAGACCAGTGGACTTATTGCAAAAACTGCCTTGGCAGGAGCCTTATACAATCTTGGTTCCTACATGCTCGCCAGTCATGTTTTAGGAGCTACTTGGTACGTAGCTTCAATTCAGAGACAGTATGAGTGTTGGATAATAACATGCAAACAAGAGATGAACAATACGCATTCCCCAACTTGTACTCCTTCGTTTTTGGACTGTGCTACTCTTGACCACCGAGAAAGACAAGCTTGGTTCAAACGCACCAAAGTTCTCAGTAATTGCGACGCCCTCAATAACAAAAATGAGTTTCAGTTTGGACTTTTCGCTGATGCTTTCACCGATCACGTTTCCTCCTCAAGATTCGTTCAAAAATACTTCTACTGTCTTTGGTGGGGTTTGAAGAATCTAAGTTCATACGGACAAAATCTTCAGACTAGCACTTACAGTGGTGAAACATTGTTTTCAAGTTTCATATGCATCGCAGGTCTAATCCTGTTCGCGCATCTCATTGGTAACATGCAGAATTATCTGCAATCTACAACTGCAAGAATTGAAGAGTGGAGACTTAGACAAAAAGATACAGAAGAGTGGATGAATCATCGGCAGCTACCACCAGAACTGCAACAACGGGTTCGAAGGTTTGTTCAGTATAAATGGCTGGCCACCAGAGGAGTAGACGAAGAAGCCATTTTGCGTGCTTTGCCTTTGGATCTTCGCCGCCAGATTCAGAGGCACCTCTGTCTCGACATTGTTCGTCGGGTTCCATTTTTCGGGCAAATGGATGACCAGCTTCTGGACGCAATATGCGAGAGGCTGGTGTCGTCACTGAACACGAAGGACTCGTATATCGTGCGAGAAGGCGATCCAGTGAGGGAGATGCTCTTCATCATCAGAGGGCAGGTGGAGAGCTCCACCACCGACGGTGGCAGAACAGGGTTTTATAACTCCATCACCCTCCGTCCGGGGGACTTCTGCGGCGAGGAGTTGCTCACGTGGGCCCTCATGCCCTCCTCCAACCTCAATCTCCCTTCCTCCACGCGCACCGTGAAGTCCATCTCGGAAGTGGAGGCTTTCGCGCTCCGCGCTGAGGACCTAAAATTCGTGGCGAACCAGTTCAAGCGACTCCACAGCAAGAAGCTGCAGCACGCCTTCCGCTACTATTCCCACCAGTGGAGGGCATGGGGGGCCCACTTCATCCAGGCGGCGTGGCGGCGGCACCGCAAGAGGAAGCTGGCGATGGAGCTGCTGGGGAAGGAGAGCCTGTACTACACGAATGTGATGGAGATAGTAGAGGAGGAGGATGTTGATGATGATGAAGGCGATGATGGAGGTGGTGCAGGTGAGAGTTCGAGTGGTCCCAGCATGGGTTTTCAGAATCTTGGGGCTACCGTTTTGGCCTCTAAGTTCGCTGCGAACACCAGAAAAGGAAAGATTAAGAAGGTGAAAATCAATCTTCCTGATTCTGATAGTTTGAAGATGCCCAAGATGTTCAAGCCTACGGAACCTGATTTCTCGACTTTCCATGATTAA 2091 0.4926 MNSDFYRLAVSSHFSSFPKSFSLRKKVPWWYQILNPRSKFVARWNRTFLYVCIAALFLDPLYFYFPITGDKACMQTDLVLGVFVTFSRTVADLFFLFHMVLKFRTAYVAPTSRVYGRKELVTDPRVIASRYLKSDFIIDLLATLPLPQIVVWFVIPAVKNSTVAHVNHTLSLIVLIQFIPRLFQIFPLQRRILKTSGLIAKTALAGALYNLGSYMLASHVLGATWYVASIQRQYECWIITCKQEMNNTHSPTCTPSFLDCATLDHRERQAWFKRTKVLSNCDALNNKNEFQFGLFADAFTDHVSSSRFVQKYFYCLWWGLKNLSSYGQNLQTSTYSGETLFSSFICIAGLILFAHLIGNMQNYLQSTTARIEEWRLRQKDTEEWMNHRQLPPELQQRVRRFVQYKWLATRGVDEEAILRALPLDLRRQIQRHLCLDIVRRVPFFGQMDDQLLDAICERLVSSLNTKDSYIVREGDPVREMLFIIRGQVESSTTDGGRTGFYNSITLRPGDFCGEELLTWALMPSSNLNLPSSTRTVKSISEVEAFALRAEDLKFVANQFKRLHSKKLQHAFRYYSHQWRAWGAHFIQAAWRRHRKRKLAMELLGKESLYYTNVMEIVEEEDVDDDEGDDGGGAGESSSGPSMGFQNLGATVLASKFAANTRKGKIKKVKINLPDSDSLKMPKMFKPTEPDFSTFHD* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0492 696 Gene3D Helix hairpin bin 369 434 - -
Vra5g0492 696 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 16-RELATED 8 694 - -
Vra5g0492 696 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 8 694 - -
Vra5g0492 696 SUPERFAMILY cAMP-binding domain-like 373 568 IPR018490 -
Vra5g0492 696 MobiDBLite consensus disorder prediction 675 696 - -
Vra5g0492 696 MobiDBLite consensus disorder prediction 621 645 - -
Vra5g0492 696 Pfam Cyclic nucleotide-binding domain 466 553 IPR000595 -
Vra5g0492 696 SMART cnmp_10 443 574 IPR000595 -
Vra5g0492 696 CDD CAP_ED 443 574 IPR000595 -
Vra5g0492 696 Gene3D Jelly Rolls 441 561 IPR014710 -
Vra5g0492 696 ProSiteProfiles cAMP/cGMP binding motif profile. 443 573 IPR000595 -
Vra5g0492 696 Pfam Ion transport protein 44 370 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vra5g0492 696 Gene3D - 47 367 - -
Vra5g0492 696 SUPERFAMILY Voltage-gated potassium channels 36 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0492 Vra-Chr5 5660032 5662862 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0492 8 691 Ion Channels AT3G48010 64.154 0.0 919
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0492 K05391 - gmx:100783672 1237.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0492 5 5660032 5662862 Vra5g0492 5 5660032 5662862 ECH