Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0490 ATGGTGGCAAGGTCATGCTTGAATTTGTTAGACCTGGTATCAGGGGATATGCTAAATTTCCCTCAAACTCCCAGATCTCTTCCAAGAGTTATGACTGATCCAGTAATCGTTTCTCATGGAGATGGTAAACAAAGTAATGATGATTATTCGGGTGTTAATTCATCTGAACACCGTCGCAAGATAATTATAGTATCAAATTCTCTTCCAGTCAATGGGAAAAGGGATAAGGTATCTGGCAGATGGTGCTTCAGTTATGATGAGGATTCAATTTTTTGGCAGTTAAAGGATGGTCTTTCTCCTGATGCTGATGTGGTGTATGTGGGATCTCTGAAGGTTGATGTTGATGCAAGTGAGCAAGATAAAGTTTCCCTTCAGTTGATGGAGGAATTCAACTGCTTGCCTACTTTTATTCCTCCAGAACTCTACAAGCAATTCCATGATGGATTCTGCAAGCAACATTTGTGGCCTCTATTCCATTACATGTTGCCCATGTATCCAGGCAATCAACGCTTTGACAGGTCACAGTGGCAGGCTTATGTTTCTGCTAACAAGATATTTGCAGATAAAGTCATGGAGGTCCTTAATCCAGAAGATGATTATGTATGGGTTCATGATTATCATCTTATGGTACTTCCCACTTTTCTGCGGAAGCGTTGTAGTCGTGTCAAGCTTGGTTTTTTCCTTCACAGTCCATTTCCTTCATCAGAAATTTATAAAACTCTGCCTGTCAGAGGTGAAATTTTGAAAGCACTGCTTAATGCAGATTTAGTTGGTTTTCACACCTTTGATTATGCTCGCCATTTTCTCTCCTGCTGCAGACGAATGCTAGGCTTGGAACATGAATCCAAGAGGGGTTACATTGGGCTTGAATACTCTGGTCGCACAATATTCATTAAAATTTTGCCTGCTGGGATTCACATGGGTCGACTTCAATCAGCCTTAGAGCATCCTTCCTCTTCTGACAAAGTCAGAGAAATCCACCAACAATTTAAGGGGAAAAAACTTATTCTTGGTGTTGATGATATGGACATATTCAAAGGTGTCAGTTTAAAATTCTTGGCCATAGAACAACTCCTGCAACAGTATCCAGAAATGCAAGGTGAAATAACACTGATCCAAATTTTAAACCCCCCAAGTAGTGCTGACAAAGATGTTGAGAATGCAAAGGAGGAGGCTTACATTACAGCCAAAAAGATAAACCAAAGGTTTGGTTCAGAAAGTTATCAACCTATCATCATCATTGACCGCCATGTTCCTTTCTATGAGAAGGCAGCCTATTATGCTTTGGCCGAATGTTGCATTGTGAATGCAGTTCGGGATGGTTTGAATTTGGTTCCATACAAGTACACTATTTGTAGGCAGGGAAGTTCTAAAGTGGATGAAGCCTTAGAAATTGCTTCTGACTCCCCGCGTGCGAGTGCACTTGTTGTTTCTGAGTTTATAGGTTGCTCACCATCTCTTAGTGGGGCAATAAGGGTAAACCCATGGGATATTGATGCAGTAGCCGAAGCACTAAATTTGGCAATCACAATGCCTGATGGAGAGAAGCAGCTTCGACATGAGAAGCACTACAGATACGTTAGTTCACATGATGTGGCCTACTGGGCTCGAAGCTTTGAGCAAGATCTAGTGTTTTCATGCAAGGATCACTATAGGAACCGTTGCTGGGGCATTGGCTTTGGTCTCAACTTCAGAATTTTATCTCTGTCTCCTAGTTTCAGGAGGCTATCCATAGACCACATTGTCCCTGCATATAAAAGGAGCAGTTGCAGGGCAATCTTTTTGGATTATGATGGCACAGTTGTACCTCAAGCATCCATCGTGAAAGCCCCCAGTCCTGAAGTCATATCCGTGCTAAATAATCTTTGCAGTGATGTTAACAACACTGTGTTTATTGTTAGTGGAAGGGGAAAAACTCCATTGAGTGAATGGTTTGATCAGTGTGAGAATCTTGGTATAGCAGCTGAGCATGGTTATTTTATAAGGTGGGGTAAGCATGCTAGTTGGCAAATGAGTCATGCAGATACAGATTTTGCATGGAAAAGGATTGCTGAACCTGTGATGAAATCTTATATGGAAGCCACAGATGGATCCTCTGTAGAGACCAAAGAGAGTGCCTTGGTATGGCATTACCGTGATGCAGATCCTGATTTTGGATCTTGGCAAGCCATGGAGCTGTTGGATCACCTTGAAAATGTACTTGCAAATGAACCTGTTGCTGTAAAAAAAGGACAACATATTATAGAAGTCAAGCCTCAGGGCATTACAAAAGGGTTAGTTGCACAGGAAGTTCTTTCTACCCTAACAAAAAAGGGTAAATTGCCAGATTTTGTACTGTGCATTGGTGATGATAGGTCTGATGAGGATATGTTTGAGAGCATTTTAACCAGATCTTACAGTGCTACATCCTCCTCAGCACCAGAAATCTTTGCATGCACTGTTGGACAAAAACCAAGCAAAGCTAGATACTACCTAGATGACACCATGGATGTGATGTCATTACTTGAGGGTCTTGGTGCTGCTTCAGTGCCTAAATCAAGATATTCTACAGAGAAAAGAGAAGTATGTTTTGAGAATATCCTATAA 2586 0.4142 MVARSCLNLLDLVSGDMLNFPQTPRSLPRVMTDPVIVSHGDGKQSNDDYSGVNSSEHRRKIIIVSNSLPVNGKRDKVSGRWCFSYDEDSIFWQLKDGLSPDADVVYVGSLKVDVDASEQDKVSLQLMEEFNCLPTFIPPELYKQFHDGFCKQHLWPLFHYMLPMYPGNQRFDRSQWQAYVSANKIFADKVMEVLNPEDDYVWVHDYHLMVLPTFLRKRCSRVKLGFFLHSPFPSSEIYKTLPVRGEILKALLNADLVGFHTFDYARHFLSCCRRMLGLEHESKRGYIGLEYSGRTIFIKILPAGIHMGRLQSALEHPSSSDKVREIHQQFKGKKLILGVDDMDIFKGVSLKFLAIEQLLQQYPEMQGEITLIQILNPPSSADKDVENAKEEAYITAKKINQRFGSESYQPIIIIDRHVPFYEKAAYYALAECCIVNAVRDGLNLVPYKYTICRQGSSKVDEALEIASDSPRASALVVSEFIGCSPSLSGAIRVNPWDIDAVAEALNLAITMPDGEKQLRHEKHYRYVSSHDVAYWARSFEQDLVFSCKDHYRNRCWGIGFGLNFRILSLSPSFRRLSIDHIVPAYKRSSCRAIFLDYDGTVVPQASIVKAPSPEVISVLNNLCSDVNNTVFIVSGRGKTPLSEWFDQCENLGIAAEHGYFIRWGKHASWQMSHADTDFAWKRIAEPVMKSYMEATDGSSVETKESALVWHYRDADPDFGSWQAMELLDHLENVLANEPVAVKKGQHIIEVKPQGITKGLVAQEVLSTLTKKGKLPDFVLCIGDDRSDEDMFESILTRSYSATSSSAPEIFACTVGQKPSKARYYLDDTMDVMSLLEGLGAASVPKSRYSTEKREVCFENIL* 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0490 861 CDD GT20_TPS 60 543 IPR001830 GO:0003824|GO:0005992
Vra5g0490 861 Pfam Trehalose-phosphatase 594 828 IPR003337 GO:0003824|GO:0005992
Vra5g0490 861 Gene3D - 593 825 IPR023214 -
Vra5g0490 861 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)-RELATED 1 850 - -
Vra5g0490 861 TIGRFAM T6PP: trehalose-phosphatase 591 837 IPR003337 GO:0003824|GO:0005992
Vra5g0490 861 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 592 793 IPR006379 -
Vra5g0490 861 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 850 IPR001830 GO:0003824|GO:0005992
Vra5g0490 861 Pfam Glycosyltransferase family 20 60 543 IPR001830 GO:0003824|GO:0005992
Vra5g0490 861 Gene3D - 673 753 - -
Vra5g0490 861 Gene3D Glycogen Phosphorylase B; 52 311 - -
Vra5g0490 861 Gene3D Glycogen Phosphorylase B; 312 528 - -
Vra5g0490 861 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 543 - -
Vra5g0490 861 CDD HAD_TPP 592 832 - -
Vra5g0490 861 SUPERFAMILY HAD-like 591 838 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0490 Vra-Chr5 5620528 5626476 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0490 1 861 Trehalose Biosynthesis Gene Families AT1G23870 65.283 0.0 1216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0490 K16055 - gmx:100812031 1635.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0490 5 5620528 5626476 Vra5g0490 5 5620528 5626476 ECH