Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0488 ATGGAGGATGAAGCTGCCAATGGCTGCGGCCAGAAGCGAGATCGCGACGAGAACGCCAGCGTTGGAAGTGGCTCCTCCACAGCCCCTCACGCCGGCAGAGAAGGCCAGGAACCCGAGTCCGAAGATGAAGGTGGAAGTGAAATGGCGAGAAGGTCGAGAGGAAGACCTCCAGGTTCCAAAAACAAGCCCAAACCACCCATTATCATCACAAGAGACAGTGCCAACGCTTTCCGATCCCATGTTATGGAAATCGCCAACGGCTGCGACATCATGGAGAGCATGGTTGTAGGTGGACAGGGACAGGTAGTAGGTGGAAGCGTGGTTGTGGCTTCGGATCCTGTTGTTATCATGGCTGCTTCATTTGGTAATGTTGCTTATGAGAGACTACCCTTAGAGGAAGAGGAAGCTCTGGTACCGGTTCCGGGCACCGGAGGATTAGGGTCACCGAGAATTGCAGGGACACAGCAACAATCACAATCGCTTGTGGGAGATCCTAACAGTTCTTCTCTCTTCCATGGAGTTCCGCAAAATCTTCTCAATTTGGTTCAATTACCTGCTAAGGGTTATTGGGGTGGCACTGCTCGCCCCCCTTTTTAA 597 0.526 MEDEAANGCGQKRDRDENASVGSGSSTAPHAGREGQEPESEDEGGSEMARRSRGRPPGSKNKPKPPIIITRDSANAFRSHVMEIANGCDIMESMVVGGQGQVVGGSVVVASDPVVIMAASFGNVAYERLPLEEEEALVPVPGTGGLGSPRIAGTQQQSQSLVGDPNSSSLFHGVPQNLLNLVQLPAKGYWGGTARPPF* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0488 198 MobiDBLite consensus disorder prediction 141 166 - -
Vra5g0488 198 PIRSF ESCAROLA 94 198 IPR014476 GO:0003680
Vra5g0488 198 PIRSF ESCAROLA 2 96 IPR014476 GO:0003680
Vra5g0488 198 MobiDBLite consensus disorder prediction 1 19 - -
Vra5g0488 198 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 8 94 IPR014476 GO:0003680
Vra5g0488 198 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 96 198 IPR014476 GO:0003680
Vra5g0488 198 MobiDBLite consensus disorder prediction 1 74 - -
Vra5g0488 198 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 18 96 198 - -
Vra5g0488 198 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 18 8 94 - -
Vra5g0488 198 MobiDBLite consensus disorder prediction 149 166 - -
Vra5g0488 198 MobiDBLite consensus disorder prediction 34 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0488 Vra-Chr5 5601648 5602577 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0488 10 96 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 58.065 2.13e-23 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0488 - - vra:106760239 363.999