Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0473 ATGATTTTAGGATCTGAAAGTGGCCTCATGTTTGACTGGGGAAGAAGACTAAATGTTGCGGCTAAGGTAGTTTCGGCTTTGACATATATGCATGAGGAGTTTGTTGATAATGGAATAGCACATGGTAACTTAAAGTCAAATAACATTTTGTTTGACAAGAATATGGATCCATGCATAAGCGAATATGGCCTAATGATAGCAGAAAACTATGATGAGTTTGTCATTTCGCATAAAAAAGGCATCAAAAGCAAAGATCTAATTGCAGCCACCTTCAAAGCTGATGTATATGCCTTGGGTATGATACTTCTGGAGCTGTTGACAGGGAAAGTGATTAAAAATGATGGATTTGATATAGTTAAATGGGTGGATTCAGTGGTCAGAGAGGAATGGAGCATTGAAGTTTTTGACAAGTCCCTAATCTCACAAGGTGCTTCGGAAGAGAGGATGATGAATCTGTTGCAGGTAGCATTAAAATGCTTAAATCCTTCTCCAAATGACAGGCCAAGCATGAGGCAAGTTGAAGTGATGACAAATGCTTTGATAGAGGAGGAAGAAAAATCCATATCCTTTGACACATGA 579 0.3851 MILGSESGLMFDWGRRLNVAAKVVSALTYMHEEFVDNGIAHGNLKSNNILFDKNMDPCISEYGLMIAENYDEFVISHKKGIKSKDLIAATFKADVYALGMILLELLTGKVIKNDGFDIVKWVDSVVREEWSIEVFDKSLISQGASEERMMNLLQVALKCLNPSPNDRPSMRQVEVMTNALIEEEEKSISFDT* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0473 192 ProSiteProfiles Protein kinase domain profile. 1 181 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0473 192 PANTHER OS10G0387400 PROTEIN 2 191 - -
Vra5g0473 192 Pfam Protein kinase domain 18 173 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0473 192 SUPERFAMILY Protein kinase-like (PK-like) 9 174 IPR011009 -
Vra5g0473 192 Gene3D Transferase(Phosphotransferase) domain 1 3 191 - -
Vra5g0473 192 PANTHER OS05G0588300 PROTEIN 2 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0473 Vra-Chr5 5203843 5204421 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0473 11 173 Receptor kinase-like Gene Family AT3G08680 37.209 1.93e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vra5g0473 Pkinase 5.7e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0473 - - pvu:PHAVU_009G180700g 326.635