Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0470 ATGCATGGACGTGGAGGTGAGAAGGGCACTCGGCACATGTGGAAAGCCCCCACACTTGGCAACTCGTCTCTGAACGCCGATGTTTCTTCGTCTTCTTCTTCATCGTCAGTGAAGTCGTTCTTTAAGGACCGTCGCAAAATTAGTGTTGGTGAATGTGCTCTCTTCAAACCTTCTGAAGATCGCCCACCATATATTGGTATAATTCGTTATCTGACAATTGGCAAAGATAAAAAATTGAAGTTTGGTGTTAGTTGGCTCTATCGATCTATTGAAGTAAAACTCAGCAAGAGTGTGCCTTTGGAGGCTGCTCCAAACGAAATCTTCTACACCTTCCATAAGGATGAGATTGATGCTGAAGCTCTGCTCCATCCTTGTAAAGTTGCATTTCTTCCTAAGGGGGCAGAACTTCAACCAGGGATTTCTTCATTTTTGTGCAGGAGGGTTTATGACATTGCAAACAAGTGTTTATGGTGGTTAAATGATCAAGATTATATTAATGATTGTCAAGAAGAAGTAGATAAACTATTATACAGGAATTGCGTAGAAATGCATGCAACAGTGCAGCCAGGTGGCCGTTCTCCTAAGCCTATGAGTAGTCCAACTTCAACATCTCAGTTAAAATCTGCTTCAGATAGTGTCCAGAATAGTACTTCTTCCTTTCCATCTCACATTAAGGGGAGGAAAAGGGAAAGGGCAGATCAAGGCTCTGAGTCAGCCAAGCGAGAACGATCAATAAAAACTGAGGATGGGGATTCTGGTATTTTCAAGCATGATAACATTTTCAAGACAGAGATTGCAAAAATTACTGAGAAGGGAGGGCTTGTTGATGGTGAAGGAGTTGAAAAATTAGTGCAGCTGATGGTTCCTGATAGAAATGAGAAGAAGATAGATTTAGCTAGCCGGTCATTGCTTGCAGCTGTCGTTGCAGCAACAGATAAGTTAGATTGCCTTAGTCAGTTTGTGCAGCAAAGGGGTTTGCCTGTATTTGATGAATGGCTCCAAGAGGTCCATAAAGGGAAGATTGGCGATGGTGATAAATCTGCTGAGGAATTTCTGTTGGTATTGCTTCGGGCACTTGATAAACTTCCAGTAAATCTTCAGGCTTTACAAACATGCAACATTGGAAAATCTGTGAATCATTTGCGAAGTCACAAAAATGCTGAAATTCAGCGGAAAGCAAGAGGTTTAGTTGATACATGGAAGAAACGTGTTGAAGCTGAAATGAATATAAATGATGCAAAGTCTGGTTCAGGTACCAATGTCCACTGGCCTGCCAAATCACGTCCTTCTGATGTTGGTCAAGGTGGGAATAGACATTCAGGTGCATCATCAGATGTTGCCATGAAGAGTTCAGTTACCCAGCTTTCTGCTTCGAAGACCACCTCTGTGAAGATTGTCCAGGGAGAGAATATTACTAGATCTGCATCAACATCTGCATTTCCAGGGCCTGCAAAATCAGTGCCGTCACCTGCAGCTGTGACTGCTAATTTAAAAGATGGGCAGCCTCGTATTGTTGCTGTAAATGGAGGTTCTGATCCTCCCATGGCAAATGCAAGGGATGAGAAAAGTTGTAGTTCTAGTCAATCTCACAACAACAGTCAATCTTGTTCTAGCGACCATGCTAAAACTGGAGGTCACTCAGTAAAGGAAGATGCCCGAAGCTCTACTGCAATGAGTGCAAATAAGATTTCTGGAGGCTCTTCACGTCATCGAAAATCCATTAATGGATTTTCAGGTTCATCTCCATCTGGAGGGCAAAGGGAAACCGGATCAAGCAGGAATTCCTCCTTGCACAAAAATTTAACTTCAGAAAAAATATCTCAACCTGGATTAATGGATAAAGCAGTTGATGGAACTTCTCTTGAGGGCAATATTCCAAAGCTGATTGTTAAAATTCCAAATCAAGGTAGAAGTCCTACACAAAGTGTCAGTGCTGGTTCTTTTGATGATCCTACAATCATGAATAGTCGAGCTTCATCTCCTGTTCTTCCCGAGAAGCATGATCAGTCTGATCACAGCCCAAAGGAAAAGAGTGACCTTTATCGTGTAAATATTGGTTCAGATATTAATACTGAATCTTGGCAGAGTAATGACTTTAAAGAGGTATTGACTGGCTCTGATGAGGGTGATGGATCACCTGCTGCAGGTACTGATGAAGAACACTGTCGGACCGGCAATGATTGTAAGAAGGCATTGGAAATATCAAAAGCTGCTTCATCATCATCTGGAAATGAAAATAAAGCTGGCAATTTGCAGGATGCTTCTTACAGCTCAATAAATGCTTTAATTGAAGGTGTTAAGTACTCTGAAGCTGATGATGGAGGAATGAATCTTCTTGCTAGCGTGGCTGCTGGAGAGATATTGAAATCTGAATTGTTAACTCCAACTGGATCTCCAGAAAGAAACACAGCTGCTGTTGAACAGTCATGCACAGACAATGGTGTTAAGTCCTCTGAAGAAAATCTTGTTCGTGATGAATGTCACTCAAATAATGGTCTTGATGTTGAACATAAGAATCTGGCCTCTGTAACAGGTGATCTAGGGGCAAATGGTGAAAGCGATTCTGATTTTCAAGCTTCAGGAGGAAAAACTGCAAGAGAGCTAAATAAGCGTGTTGATGCATGTAGTATGGATTTACAACAGGTTTCTGAAACTACTTTGGAAAGCAAAGGAAAATTAAATGAAAAATCTGGACCTACTTCACTGGGTGGACTTGCTGAAAATTCTGTACAAGAAGCTGGAGATGGTGATGGAAGCAAGCAGCTACAGGAGGTTGTTCAGGGAGTCAATGCTGGCGAAATTCATGATAAAATCAGTTGTGTTGCTGAAGTTGAGGCAGAAGCAGCTAAAAAATTGTCACATACACCTGCGGAAGTGGATGTACAGAGTGATAACTATACTGCTGAAGGATCAAGTGGCAGTGGACAGACAGTTAAAAAGCCTCCTCCTGTACTTGTTCAGTCTGATTTGGCAAGAGGTAAAGATGATAAAGCACTCCATTCTTCTGGTTATAGTGTTGACAAGGTTCTTAAAGACTTCCCTGAACGGGAATCTGACAAAACTGATGATGTTGATGCTGAGAATCATGTCAACCAGTCTAGAAGTAAAAGAAATGAGTCTGAAAGTGATACCTTGACCATGCCTGAGAATAGAGGTACATGTTCTATTGTGACTGGTCTTGTTGCTGAACATGTAGAGGAGAATTTAGAAACGAGAGATGTTCGTGACCAACCTTCTAGAGAGGATCTTCCTGAAGATTCACCTAGTGTTCTTTCACAAGAAATCGATAAGCATCTCAATTCTAAAAGGTTGAAGTTGACTTCCTCAGAAGCAGAGGAGGCTGAGGAGTGCACCTCTACCACTGCAGATGCTTCTTCGATGTCTGCTGCAGCTGTGTCAGATGCGGATGCAAAGGTTGGATTTGATTTAAATGAAGGGCTCAATGCAGATGATGGAAGATGTGAGTTCAACAGCATTGCCAATTCAGGATGTGCACCTTGTGGTCGATTGATCAGTCCTGTTCCATTTCCTGCTTCATCTATGTCTTGTGGTATTCTTGCCCCAGTCACCGTGGCATCTGCTGCTAAGGGGCACTTTGTGCCTCCCGAAGATTTATTGAGAAGTAAAGGTGAAATTGGTTGGAAGGGATCTGCTGCCACCAGTGCATTCAGGCCAGCTGAACCCAGGAAAGTTATGGAAATGTCTCTTGGTACATCAGCTGCCCCTATTCCTGATGCTCCAGCTGGAAAGCAGAGTCGAGCACCATTGGATATTGACTTGAATGTGGCCGATGAAAGAATCCTTGATGACATTTCTTGTGCTCGACACACAAATTCTATATCTCTTGCAACTGATAGCCATGATCCTGTATGCAGTAAAATACCTTCACCTGTTCGCAGCTCTGGAGGGCTTGGTCTTGACTTAAACCAAGTGGATGATGCTTCTGACATGGGCATTTGCTTGAACAGTAATCATAAAATTGATGTGCCAATTATGCAGGGGAAATCATCATTGGGTGGTCCACCAATTAGAGAAGTGAATGTCCACAGGGACTTTGATTTGAACAACGGACCTTCTGTGGATGAAATCACCACCGAATCCTCATTGTTCTCTCATCACTCCAGGAGCAACGTGCCTTCTCAATTACCTGTTTCTGGACTTAGAATGACTACTGAGCCAGGCAACTTCTCTTGGCTTCCTTCCAGTGGCAACACCTATTCTGCTGTCACAATATCTTCAATTATGCCTGATAGAGGGGATCAGCCCTTTTCAATTGTTGCTCCAAATGGGCCACAAAGGTTGTTGACTCCTGCAGCTGGTGGCAACCCATTTGGACCTGATATTTATAGGGCCCCAGTATTGTCATCTTCTCCTGCAGTGTCATATCCATCTGCTCCATTTGAGTATCCCGTCTTCCCTTTTAACTCCAGCTTCCCTCTTCCATCAGCTTCTTTTTCTGCTGGGTCAACTACTTATGTATATCCAACATCAGCCAATCGGCTTTGCTTCCCTGCAGTAAATTCACAGTTAATGGGGCCTGCCGGCACAGTTTCATCTCATTATCCCAGGCCCTATGTTGTTGGTCTTACAGAAGGTAACAATAGTGGTAGTGCTGAGACCAGTAGAAAATGGACAAGGCAGGGTTTAGATCTTAATGCTGGACCTGGCTGTTCAGACATGGAGGGGAGAGATGAGAGTGTTCGGAAGAGGAAGGAGCCTGATGGAGGGTGGGATGCCTACAACCAATCCTCATGGCAATAG 4761 0.4314 MHGRGGEKGTRHMWKAPTLGNSSLNADVSSSSSSSSVKSFFKDRRKISVGECALFKPSEDRPPYIGIIRYLTIGKDKKLKFGVSWLYRSIEVKLSKSVPLEAAPNEIFYTFHKDEIDAEALLHPCKVAFLPKGAELQPGISSFLCRRVYDIANKCLWWLNDQDYINDCQEEVDKLLYRNCVEMHATVQPGGRSPKPMSSPTSTSQLKSASDSVQNSTSSFPSHIKGRKRERADQGSESAKRERSIKTEDGDSGIFKHDNIFKTEIAKITEKGGLVDGEGVEKLVQLMVPDRNEKKIDLASRSLLAAVVAATDKLDCLSQFVQQRGLPVFDEWLQEVHKGKIGDGDKSAEEFLLVLLRALDKLPVNLQALQTCNIGKSVNHLRSHKNAEIQRKARGLVDTWKKRVEAEMNINDAKSGSGTNVHWPAKSRPSDVGQGGNRHSGASSDVAMKSSVTQLSASKTTSVKIVQGENITRSASTSAFPGPAKSVPSPAAVTANLKDGQPRIVAVNGGSDPPMANARDEKSCSSSQSHNNSQSCSSDHAKTGGHSVKEDARSSTAMSANKISGGSSRHRKSINGFSGSSPSGGQRETGSSRNSSLHKNLTSEKISQPGLMDKAVDGTSLEGNIPKLIVKIPNQGRSPTQSVSAGSFDDPTIMNSRASSPVLPEKHDQSDHSPKEKSDLYRVNIGSDINTESWQSNDFKEVLTGSDEGDGSPAAGTDEEHCRTGNDCKKALEISKAASSSSGNENKAGNLQDASYSSINALIEGVKYSEADDGGMNLLASVAAGEILKSELLTPTGSPERNTAAVEQSCTDNGVKSSEENLVRDECHSNNGLDVEHKNLASVTGDLGANGESDSDFQASGGKTARELNKRVDACSMDLQQVSETTLESKGKLNEKSGPTSLGGLAENSVQEAGDGDGSKQLQEVVQGVNAGEIHDKISCVAEVEAEAAKKLSHTPAEVDVQSDNYTAEGSSGSGQTVKKPPPVLVQSDLARGKDDKALHSSGYSVDKVLKDFPERESDKTDDVDAENHVNQSRSKRNESESDTLTMPENRGTCSIVTGLVAEHVEENLETRDVRDQPSREDLPEDSPSVLSQEIDKHLNSKRLKLTSSEAEEAEECTSTTADASSMSAAAVSDADAKVGFDLNEGLNADDGRCEFNSIANSGCAPCGRLISPVPFPASSMSCGILAPVTVASAAKGHFVPPEDLLRSKGEIGWKGSAATSAFRPAEPRKVMEMSLGTSAAPIPDAPAGKQSRAPLDIDLNVADERILDDISCARHTNSISLATDSHDPVCSKIPSPVRSSGGLGLDLNQVDDASDMGICLNSNHKIDVPIMQGKSSLGGPPIREVNVHRDFDLNNGPSVDEITTESSLFSHHSRSNVPSQLPVSGLRMTTEPGNFSWLPSSGNTYSAVTISSIMPDRGDQPFSIVAPNGPQRLLTPAAGGNPFGPDIYRAPVLSSSPAVSYPSAPFEYPVFPFNSSFPLPSASFSAGSTTYVYPTSANRLCFPAVNSQLMGPAGTVSSHYPRPYVVGLTEGNNSGSAETSRKWTRQGLDLNAGPGCSDMEGRDESVRKRKEPDGGWDAYNQSSWQ* 1587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0470 1586 MobiDBLite consensus disorder prediction 520 542 - -
Vra5g0470 1586 MobiDBLite consensus disorder prediction 951 1052 - -
Vra5g0470 1586 CDD TFIIS_I 340 405 - -
Vra5g0470 1586 MobiDBLite consensus disorder prediction 885 907 - -
Vra5g0470 1586 MobiDBLite consensus disorder prediction 664 680 - -
Vra5g0470 1586 MobiDBLite consensus disorder prediction 1532 1547 - -
Vra5g0470 1586 MobiDBLite consensus disorder prediction 496 618 - -
Vra5g0470 1586 MobiDBLite consensus disorder prediction 694 723 - -
Vra5g0470 1586 SMART TFS2_5 333 406 IPR003617 GO:0005634
Vra5g0470 1586 MobiDBLite consensus disorder prediction 958 978 - -
Vra5g0470 1586 MobiDBLite consensus disorder prediction 1532 1586 - -
Vra5g0470 1586 SMART BAH_4 45 160 IPR001025 GO:0003682
Vra5g0470 1586 MobiDBLite consensus disorder prediction 410 445 - -
Vra5g0470 1586 MobiDBLite consensus disorder prediction 187 251 - -
Vra5g0470 1586 MobiDBLite consensus disorder prediction 192 222 - -
Vra5g0470 1586 MobiDBLite consensus disorder prediction 550 607 - -
Vra5g0470 1586 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1586 - -
Vra5g0470 1586 MobiDBLite consensus disorder prediction 885 919 - -
Vra5g0470 1586 MobiDBLite consensus disorder prediction 632 680 - -
Vra5g0470 1586 MobiDBLite consensus disorder prediction 1009 1044 - -
Vra5g0470 1586 Pfam BAH domain 46 153 IPR001025 GO:0003682
Vra5g0470 1586 MobiDBLite consensus disorder prediction 1561 1576 - -
Vra5g0470 1586 Pfam TFIIS helical bundle-like domain 355 404 IPR017923 -
Vra5g0470 1586 MobiDBLite consensus disorder prediction 1068 1083 - -
Vra5g0470 1586 MobiDBLite consensus disorder prediction 634 663 - -
Vra5g0470 1586 MobiDBLite consensus disorder prediction 793 818 - -
Vra5g0470 1586 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 315 417 IPR035441 -
Vra5g0470 1586 MobiDBLite consensus disorder prediction 223 251 - -
Vra5g0470 1586 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 279 408 IPR035441 -
Vra5g0470 1586 Gene3D - 26 267 IPR043151 -
Vra5g0470 1586 ProSiteProfiles TFIIS N-terminal domain profile. 327 407 IPR017923 -
Vra5g0470 1586 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1586 - -
Vra5g0470 1586 ProSiteProfiles BAH domain profile. 45 160 IPR001025 GO:0003682
Vra5g0470 1586 MobiDBLite consensus disorder prediction 795 817 - -
Vra5g0470 1586 MobiDBLite consensus disorder prediction 1068 1094 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0470 Vra-Chr5 5174053 5181143 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vra5g0470 BAH 4.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0470 - - gmx:100788512 2514.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0470 5 5174053 5181143 Vra5g0470 5 5174053 5181143 ECH