Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0442 ATGGAGATCACGAGCAGCCATAACAGCTGCAGCAGTATGATGTGGTTTTTCAAAGATAAAGGGTTTGATGACAACAGTGTGCAAGGAATTTTCCGACGGTGTAAGCGCCTTCAGGATGTGCATCAGGAAAGAGCGAGTGAGAATTGGGAGTATTTGAGAAGCATTGGCATTGAAGAAAGAAAGTTGCCCTCAATTGTTTCAAAATGCCCCAAAATTCTTGCGCTGGATCTTTATGACAAGATTATGCCCACGGTTGAGTGTCTCAGGACCCTGGGAACAAAACCACGTGAGGTTGCTACTGCCATAGCCAAGTTCCCTCACATACTCTCAAACAGTGTGGAAGAGAAGCTTTGTCCCCTTTTGGCCTTCTTTCAGGCTTTGGGTATCCCTGAAAAGCATATTGGCAAAATGATACTGCTCAACCCTAGGCTCATAAGTTACAGCATTGAAACAAAGTTGACTGAAATTGTGAACTTTCTTGCTAGCCTTGGTCTCAATAGAGATGGAATGATTGGAAAAGTTATAGTCAAGGATCCCTACATTATGGGTTATAGTGTTGAGAAAAGACTCCGCCCTACTTCACAGTTCCTCAAATCAATAGGTCTGAGTGAGCAGGATCTTCAAGCAGTGGCTGTGAACTTCCCAGCAATCTTGAGTAGAGATGTGAACAAGCTTTTGGTACCCAATTATGCGTATCTAAAGAGACGAGGATTTCAAGAAAGACAGTTAGTTGCTTTGGTGGTTGGTTTTCCTCCTATATTGATCAAGAGCATTCAGAATTCATTAGAACCAAGATTCAAATTTTTAATGGATGTGATGGGAAGACAAGTTGATGAAGTTATTGATTATCCTTGTTTCTTTCACCATGGCCTCAAGAGAAGAATAGAGCCACGGTACAAACTTCTAAAGGAGAGGAATTTAAATTGTAGCTTGAGTGAAATGTTGGATTGCAACAAGAAGAAGTTCTTCTTGAAGTTTGGTTTGTTAGAAGGACAAGCCTTGAGTAACTAG 1011 0.4135 MEITSSHNSCSSMMWFFKDKGFDDNSVQGIFRRCKRLQDVHQERASENWEYLRSIGIEERKLPSIVSKCPKILALDLYDKIMPTVECLRTLGTKPREVATAIAKFPHILSNSVEEKLCPLLAFFQALGIPEKHIGKMILLNPRLISYSIETKLTEIVNFLASLGLNRDGMIGKVIVKDPYIMGYSVEKRLRPTSQFLKSIGLSEQDLQAVAVNFPAILSRDVNKLLVPNYAYLKRRGFQERQLVALVVGFPPILIKSIQNSLEPRFKFLMDVMGRQVDEVIDYPCFFHHGLKRRIEPRYKLLKERNLNCSLSEMLDCNKKKFFLKFGLLEGQALSN* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0442 336 PANTHER CGI-12 PROTEIN-RELATED 12 329 IPR003690 GO:0003690|GO:0006355
Vra5g0442 336 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF6, CHLOROPLASTIC/MITOCHONDRIAL 12 329 - -
Vra5g0442 336 Pfam mTERF 112 322 IPR003690 GO:0003690|GO:0006355
Vra5g0442 336 Pfam mTERF 6 168 IPR003690 GO:0003690|GO:0006355
Vra5g0442 336 SMART mt_12 277 308 IPR003690 GO:0003690|GO:0006355
Vra5g0442 336 SMART mt_12 172 203 IPR003690 GO:0003690|GO:0006355
Vra5g0442 336 SMART mt_12 63 94 IPR003690 GO:0003690|GO:0006355
Vra5g0442 336 SMART mt_12 208 239 IPR003690 GO:0003690|GO:0006355
Vra5g0442 336 SMART mt_12 135 166 IPR003690 GO:0003690|GO:0006355
Vra5g0442 336 SMART mt_12 28 58 IPR003690 GO:0003690|GO:0006355
Vra5g0442 336 SMART mt_12 244 276 IPR003690 GO:0003690|GO:0006355
Vra5g0442 336 SMART mt_12 99 130 IPR003690 GO:0003690|GO:0006355
Vra5g0442 336 Gene3D Transcription termination factor 3, mitochondrial 98 329 IPR038538 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vra5g0442 mTERF 4.6e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0442 K15032 - gmx:100816929 607.446