Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0440 ATGGGTCGTCCAAAATTGATTTTGAAACCCATCACAAATGGGAGAGATCGTGATCTGGCTTTGATGAAGAGAAAGAAGGCATTATTGAAGACAATATCTGAATTTTGTAGTGTGTGTGGAGTGAAAGCTTGTTTGATTATGTATGATGGAAAAGGTGATTCTCCACCATTGACTTGGCCCCAAGACCCCATTGAGATGCACTCCATCATTCAGAGGTATGAGCGTATGGTGTTTGAGAAAATTCCTAAGAACTTTGATCTCAATAACTTTTTTGAGATGAGGAAGAACATGGTTGACAGTGAGATTGCCAGAGTTCAGAAAGAGATCCTTGAGACCAAATATCCCACTTGGCATCCATGCTTCAACAACCTTGGTGCTGAAGAATTGAAGAATTTCATAGCTAGATTGGACTGTAAGCTTGAAGCATGTAATCAACGAACAGTAATGTTCAAATGCAAGAAACAAGATGAAGCCCAATTCAATTTCAAGCAATGCCTGATTCAACCAGAATGTGTTGCTCCAAACCCAAACCAACTGGTTTTCATGAAGGATATTTTCCAAAACCAACTTCTTTTTGCTCCAATGAACCCACTTAATGGTAACCTTGCACCATCTTTCCAACACAATTCTGAAAAAGGCTCTAGTTCTCAATCCCAAAAGCTTAACTTTGATCCAAATCTCATGCAAGTGAAGGCAGAGAACACAGGAGTGGTGGATACATCCAATGCATGCCAAACTGATGTGCTTAAAAATCCTTCAAATAAATTTGATGTGCCTTGTGATTTTCTTGATGAGTCCTTTAATCTTTTTGACCAACTTGGTGAAATACAAAGCTTGAATCAACATTGGGGGAATAATCAACAGGATGCACTTGTGGTTGGAGGAAGTATCACAACAATAAATGGTGGTGTTACTAATGATACAAATTTTCATGGAAATCAATACAATATAGAGACCTCTCTTTGCAATTACAATGGAGTTATGCAATCCTATAACTATGACGCATCATGGCAGGATATTGGTTTTCAGCAACAGAATCTGCAGAACATGGTAACTTTACCTTCATTTCAACCATCAGAAGATAAATTCAGGCAGATCACCACAACAGATACCTTAAAAATCTGTTATCCTAACATATACTTTAAATAA 1149 0.3777 MGRPKLILKPITNGRDRDLALMKRKKALLKTISEFCSVCGVKACLIMYDGKGDSPPLTWPQDPIEMHSIIQRYERMVFEKIPKNFDLNNFFEMRKNMVDSEIARVQKEILETKYPTWHPCFNNLGAEELKNFIARLDCKLEACNQRTVMFKCKKQDEAQFNFKQCLIQPECVAPNPNQLVFMKDIFQNQLLFAPMNPLNGNLAPSFQHNSEKGSSSQSQKLNFDPNLMQVKAENTGVVDTSNACQTDVLKNPSNKFDVPCDFLDESFNLFDQLGEIQSLNQHWGNNQQDALVVGGSITTINGGVTNDTNFHGNQYNIETSLCNYNGVMQSYNYDASWQDIGFQQQNLQNMVTLPSFQPSEDKFRQITTTDTLKICYPNIYFK* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0440 382 PANTHER PROTEIN, PUTATIVE-RELATED 5 254 - -
Vra5g0440 382 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vra5g0440 382 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Vra5g0440 382 Coils Coil 126 146 - -
Vra5g0440 382 PANTHER MADS BOX PROTEIN 5 254 - -
Vra5g0440 382 SUPERFAMILY SRF-like 1 83 IPR036879 GO:0003677|GO:0046983
Vra5g0440 382 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vra5g0440 382 Gene3D - 14 100 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0440 Vra-Chr5 4632557 4634027 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0440 1 150 Type I MADS-box Gene Family AT5G55690 27.742 9.07e-14 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vra5g0440 SRF-TF 6.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0440 - - vra:106760100 788.489