Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0436 ATGAGCTATGGAAGCAGAGGGAAGCTGAAAGATACAAGCTTGAGCACATCAGCTGAAAGCAACATGAACAGCAGGAGGGACAAGATACTGGCTCAGTACAGTGCAGATGCTGAGATTCTGGCTGAGTTTGAGCAGTCTGGTGTGTCTGGAAAATCATTTGACTACTCCAGGATGGTCCTTGATCCTCCCAGGTTAGTGTCTGGAGAAAAAATGACTGCATATCTGTCCAAAATCCAAAGGGGTGGCCTTATCCAACCCTTTGGTTGTATGCTTGCAATTGAGGAACCCACTTTTAGGATCATTGGGTACAGTGAGAATTGCTTTCAGTTGTTGGGTTTGGAGCGGCAAATTGACTCTAACATGTTAATAAATTTGATTGGGGTTGATGCAACGACCCTTTTCACTCCACCTTCTGGGGCTTCCCTAGCTAAAGCTGTGGCTTCCAGGGAAATTTCTCTTCTGAACCCGATTTGGGTCTATGCAAGGACAACCCAGAAGCCATTTTATGCCATACTACATAGGATCGATGTTGGGGTTGTGATTGATTTGGAGCCAGCGCGGATGAGTGATCCGGCATTGTCACTTGCCGGGGCAGTTCAATCCCAGAAGCTGGCTGTGAGGGCTATTTCAAGGCTGCAATCTCTTCCTGGGGAAGATATTGGCTTGCTGTGTGACACAGTTGTTGAGGAAGTGCAGAAGCTTACCGGATATGACAGGGTAATGGTTTATAAGTTTCATGAGGATGATCATGGTGAGGTTGTAGCTGAGATTAGGAGGTCAGATTTGGAGCCTTACCTGGGTTTACATTATCCTGCAACAGATATCCCTCAAGCTTCTCGCTTCTTGTTCAAGCAAAACCGGGTTAGGATTATTTGTGATTGCCATGCAAAGCCAGTTAAGGTCATTCAGAGTGAAGAATTAAGGCAACCTCTTTGCTTGGTGAATTCAACACTTAGGTTACCACATGGTTGTCACACACAGTACATGGCCAACATGGGATCAATTGCCTCTCTGGTGATGGCAATTATAGTCAATGGAAAGAATGAAACAAGGCTTTGGGGTTTGCTAGTTTGTCATCACACTTCACCACGATTTGTTTCTTTCCCGGTTCGCTATGCTTGTGAGTTCCTAATGCAGGCTTTTGGACTGCAACTTTATATGGAGATTCAATTGGCATCACAAATGGCAGAAAAGAGAATGCTTAAAACTCAAACCTTACTGTGTGACATGCTCCTTCGTGATGCACCATTCGGCATTGTGACTCAGTCTCCAAGTATCATGGATCTTGTGAAGTGTGATGGAGCTGCCTTATTTTATGATGGAAATTGCTGGTTGTTAGGTACATCCCCAACTGAAGCACAGGTAAAAGACATTGCAGAATGGCTACTTAGTAATCATGGGGATTCAACAGGTTTGACAACAGATAGTTTAGCTGATGCTGGTTATCCAGGTGCTGCTTCACTGGGTGATGCGGTTTGTGGCATGGCCACGGCAAGAATCAATTCAAAACATTTCTTGTTCTGGTTCAGGTCTCACACTGCTAAGGAAGTCAGATGGGGAGGAGCGAAGCACCATCCAGAGGATAGGGATGATGGAGGAAAAATGAACCCAAGATCATCATTCAAAGCTTTTCTTGAAGTAGTCAAAAGCAAAAGTTTGCCTTGGGAAGTGTCAGAAATCAATGCTATTCACTCATTACAACTAATGATAAGAGATTCTTTCCAGGACACTGAGATAACCGGTCCAAAGACTTCAAACTATGTGCAGAAAACTGACACTTCAACTGGAGCGATGGATGAACTCAGTTCAGTAGCACTTGAAATGGTGAGATTAATCGAGACTGCAACAGTTCCGATTTTCGGGGTTGATTCAGATGGGGTAATCAATGGATGGAATTCAAAGATTGCTGAACTGACAGGTCTACAAGGCAGTGAAGCTATGGGGAAATCCATGGTAAATGAAATTATACATGCGGACTCATGTGACACTTTTAAAAATACTCTAAGCAGAGCCTTGCAAGTTTTTGCAGGAGAGGAGGACAAAAGTGTTGAGTTGAAAATAAAGCACTTTGGGATTCAACAGCAACAGAAAGTTGTATATCTCATGGTCAATGCTTGCACTAGTAGGGACTACACAGATTCTGTTGTTGGGGTATGCTTTGTAGGTAAAGACATCACTTATGAGAAAATGGTTCAAGATAAATTCATCAAGTTGGAAGGTGATTACAAAACAATCGTGCAAAGTCTCAGTCCACTTATTCCACCCATATTTTCTTCTGACGAGAGTGCATGCTGTTCTGAATGGAATGCAGCCATGGAAAGACTAACAGGTTGGAAAAGAGATGAAGTCATAGGAAAATTGCTTCCTGGTGAAATATTTGGAAGTTTTTGTCGACTAAAAGGTCAAGATACCCTGACTAATTTTATGATTTTAATATACCGTGGAATAAGTGGTCAAGATTCTGAGAAGTTACCATTTGGATTTTTTGATAGAAATGGAGAATTTGTTGAGAGTTATATAACAGCAAACAAGAGAATTGATGCTGGTGGGAATATACTTGGCTGTTTTTGCTTCATGCAGGTTGTAACACCAGACCTGAATCACTCCTCTGAAGAACACAAGCCAAGAGGCAGAGAAAACATTTCTGAATCCGAAGAGTTGGCTTATATACTACAAGAGATGAAGAAACCTTTAAATGGCATACGATTCACGCACAAACTTTTGGAAAGTACAACTGTTTCAGAAAACCAAAAACAATTTCTTGACACCAGTGATGCATGTGAAAGACAAATCATGGCAATTATTGAGGATACAAATTTAGGAAGTATTAATGAAGGCAGCACTTTGCAGCTAAACATGGAAGAATTTGTTCTGGGAAATATTTTAGATGCCATTGTCAGTCAAGTCATGATATTGATAAGAGAAAAGAACTTGCAACTGTTTCATGAAATTCCTGATGAAATAAAAGTGCTTTCTTTATATGGTGACCAAATTAGGCTTCAGGTGGTCTTGTCTGACTTTTTGCTTAATGTAGTCAGACATACACCATCTCCAAATGGCTGGGTAGAAATCAAGATTTCACCTGGTTTAAAGATAATACAGGATGGCAATGAGTTTATCCATCTGAAGTTCAGAATGACCCATTCTGGTCAAGGTCTTCCTTCAGATGTTCTTCATGATATGTTTGAAGGAGGGAATCAATGGAATACGCAGGAAGGTCTAGGACTATACATGTCCAAAAAAATCCTCAGTAGGATGAGTGGTCATGTCCACTACGTAAGAGAACAAAATAAGTGTTATTTTCTCATTGATCTTGACATTAGAACAAGAAAAGAAAGGCAAAAGAGTTTGCATGCAGAGACAAGCATGTTAAGCTAG 3378 0.4133 MSYGSRGKLKDTSLSTSAESNMNSRRDKILAQYSADAEILAEFEQSGVSGKSFDYSRMVLDPPRLVSGEKMTAYLSKIQRGGLIQPFGCMLAIEEPTFRIIGYSENCFQLLGLERQIDSNMLINLIGVDATTLFTPPSGASLAKAVASREISLLNPIWVYARTTQKPFYAILHRIDVGVVIDLEPARMSDPALSLAGAVQSQKLAVRAISRLQSLPGEDIGLLCDTVVEEVQKLTGYDRVMVYKFHEDDHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFKQNRVRIICDCHAKPVKVIQSEELRQPLCLVNSTLRLPHGCHTQYMANMGSIASLVMAIIVNGKNETRLWGLLVCHHTSPRFVSFPVRYACEFLMQAFGLQLYMEIQLASQMAEKRMLKTQTLLCDMLLRDAPFGIVTQSPSIMDLVKCDGAALFYDGNCWLLGTSPTEAQVKDIAEWLLSNHGDSTGLTTDSLADAGYPGAASLGDAVCGMATARINSKHFLFWFRSHTAKEVRWGGAKHHPEDRDDGGKMNPRSSFKAFLEVVKSKSLPWEVSEINAIHSLQLMIRDSFQDTEITGPKTSNYVQKTDTSTGAMDELSSVALEMVRLIETATVPIFGVDSDGVINGWNSKIAELTGLQGSEAMGKSMVNEIIHADSCDTFKNTLSRALQVFAGEEDKSVELKIKHFGIQQQQKVVYLMVNACTSRDYTDSVVGVCFVGKDITYEKMVQDKFIKLEGDYKTIVQSLSPLIPPIFSSDESACCSEWNAAMERLTGWKRDEVIGKLLPGEIFGSFCRLKGQDTLTNFMILIYRGISGQDSEKLPFGFFDRNGEFVESYITANKRIDAGGNILGCFCFMQVVTPDLNHSSEEHKPRGRENISESEELAYILQEMKKPLNGIRFTHKLLESTTVSENQKQFLDTSDACERQIMAIIEDTNLGSINEGSTLQLNMEEFVLGNILDAIVSQVMILIREKNLQLFHEIPDEIKVLSLYGDQIRLQVVLSDFLLNVVRHTPSPNGWVEIKISPGLKIIQDGNEFIHLKFRMTHSGQGLPSDVLHDMFEGGNQWNTQEGLGLYMSKKILSRMSGHVHYVREQNKCYFLIDLDIRTRKERQKSLHAETSMLS* 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0436 1125 SUPERFAMILY PYP-like sensor domain (PAS domain) 610 721 IPR035965 -
Vra5g0436 1125 CDD PAS 615 725 IPR000014 -
Vra5g0436 1125 Pfam PAS fold 607 725 IPR013767 GO:0006355
Vra5g0436 1125 Pfam PAS fold 741 861 IPR013767 GO:0006355
Vra5g0436 1125 SUPERFAMILY GAF domain-like 397 575 - -
Vra5g0436 1125 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355|GO:0009584
Vra5g0436 1125 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355|GO:0009584
Vra5g0436 1125 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355|GO:0009584
Vra5g0436 1125 PRINTS Phytochrome signature 419 439 IPR001294 GO:0006355|GO:0009584
Vra5g0436 1125 PRINTS Phytochrome signature 504 523 IPR001294 GO:0006355|GO:0009584
Vra5g0436 1125 PRINTS Phytochrome signature 537 555 IPR001294 GO:0006355|GO:0009584
Vra5g0436 1125 PRINTS Phytochrome signature 607 623 IPR001294 GO:0006355|GO:0009584
Vra5g0436 1125 PRINTS Phytochrome signature 626 641 IPR001294 GO:0006355|GO:0009584
Vra5g0436 1125 PRINTS Phytochrome signature 703 720 IPR001294 GO:0006355|GO:0009584
Vra5g0436 1125 PRINTS Phytochrome signature 723 743 IPR001294 GO:0006355|GO:0009584
Vra5g0436 1125 ProSiteProfiles PAS repeat profile. 604 673 IPR000014 -
Vra5g0436 1125 SUPERFAMILY PYP-like sensor domain (PAS domain) 755 857 IPR035965 -
Vra5g0436 1125 SMART gaf_1 219 399 IPR003018 GO:0005515
Vra5g0436 1125 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 951 1101 IPR036890 -
Vra5g0436 1125 SMART pas_2 740 810 IPR000014 -
Vra5g0436 1125 SMART pas_2 606 673 IPR000014 -
Vra5g0436 1125 ProSiteProfiles Histidine kinase domain profile. 889 1109 IPR005467 -
Vra5g0436 1125 ProSiteProfiles PAC domain profile. 681 737 IPR000700 -
Vra5g0436 1125 Pfam Phytochrome region 402 576 IPR013515 GO:0006355|GO:0009584
Vra5g0436 1125 Gene3D PAS domain 77 322 - -
Vra5g0436 1125 MobiDBLite consensus disorder prediction 1 21 - -
Vra5g0436 1125 SMART HisKA_10 882 947 IPR003661 GO:0000155|GO:0007165
Vra5g0436 1125 CDD HATPase_Phy-like 994 1107 IPR044767 -
Vra5g0436 1125 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 379 IPR016132 -
Vra5g0436 1125 SUPERFAMILY PYP-like sensor domain (PAS domain) 78 186 IPR035965 -
Vra5g0436 1125 PANTHER TWO-COMPONENT HISTIDINE KINASE 25 1114 - -
Vra5g0436 1125 PANTHER PHYTOCHROME E 25 1114 - -
Vra5g0436 1125 Gene3D - 200 550 IPR029016 -
Vra5g0436 1125 Pfam PAS fold 73 186 IPR013654 GO:0006355
Vra5g0436 1125 Gene3D PAS domain 605 741 - -
Vra5g0436 1125 SUPERFAMILY GAF domain-like 199 385 - -
Vra5g0436 1125 Gene3D - 394 567 IPR043150 -
Vra5g0436 1125 ProSiteProfiles PAS repeat profile. 741 786 IPR000014 -
Vra5g0436 1125 CDD PAS 752 862 IPR000014 -
Vra5g0436 1125 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 995 1102 IPR003594 -
Vra5g0436 1125 Pfam His Kinase A (phospho-acceptor) domain 883 945 IPR003661 GO:0000155|GO:0007165
Vra5g0436 1125 PIRSF Phytochrome_conventional 7 1116 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Vra5g0436 1125 SMART HKATPase_4 995 1109 IPR003594 -
Vra5g0436 1125 TIGRFAM sensory_box: PAS domain S-box protein 611 733 IPR000014 -
Vra5g0436 1125 CDD HisKA 882 937 IPR003661 GO:0000155|GO:0007165
Vra5g0436 1125 Gene3D PAS domain 754 865 - -
Vra5g0436 1125 Gene3D - 926 1101 IPR036890 -
Vra5g0436 1125 Pfam GAF domain 219 389 IPR003018 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0436 Vra-Chr5 4573654 4579012 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0436 15 1109 Histidine Kinase Gene Family AT4G18130 62.511 0.0 1456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0436 K12123 - gmx:100808192 2063.5