Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0432 ATGACGTCACGTTCGGGTCAGGGCAGCAGCGGAAGCAGCAGGACCCGTGTGGGAAAGTACGAGTTGGGTCGGACCCTGGGTGAGGGCAATTTCGCCAAGGTAAAGTTCGCCAGGCACGTGGAAAGCAGAGAGAACGTCGCCATCAAGATTCTCGACAAGGAGAAAGTTCTCAAGCACAAAATGATTGATCAGATAAAACGGGAAATATCAACAATGAAACTTATTAGACATCCAAATGTCATACGTATGTATGAGGTAATGGCTAGCAAAACAAAGATATACATTGTATTGGAATTTGTCACTGGTGGAGAGCTGTTTGATAAAATTGCACGCAGCGGGAGGTTGAAAGAAGATGAAGCAAGAAAATATTTTCAACAGCTTATATGTGCTGTGGATTACTGCCATAGTAGAGGTGTTTTCCATAGAGACTTAAAGCCTGAGAATTTGTTGCTGGATGCTAATGGAGTGCTTAAAGTATCAGATTTTGGATTGAGTGCATTGCCTCAACAAGTTCGGGAAGATGGGCTACTTCACACAACATGCGGTACGCCAAATTATGTTGCCCCAGAGGTGATTCACAACAAAGGTTATGATGGTGCAAAGGCAGATCTGTGGTCATGTGGTGTTATTCTCTTTGTTTTAATGGCAGGCTATTTGCCCTTTGAAGAAACCAACCTAACGGCCTTATATAAAAAGATTTACAAGGCTGAGTTCACATGTCCTCCATGGTTCTCTTCAAGTGCAAAGAAACTAATCAACAGAATACTTGATCCAAATCCTGCCACTAGGATTACATTTGCTGAGGTCGTTGAGAATGATTGGTTCAAGAAGGGATATAAGCCTCCCGTATTTGAACAGCCTACTGTTAGTCTTGATGATGTAAATTCTATTTTCAGCGAATCTTTGGATTCGAAAGATCTTGTAGTTGAGAGGCGTGAAGAGGAGGGGCATGTGGCACCAGTGACAATGAATGCCTTTGAACTTATATCTAAATCTCAAGGTCTCAACCTCAGTAGTCTGTTTGAGAAGCAAATGGGACTTGTTAAAAGGGAAACACGATTCACATCCAAATGTTCAGCAGATGAAATAATTTCAAAAATTGAGAAAGCTGCAGGACCCCTGGGTTTTGATGTTAAGAAGAACAACTGTAAGTTAAAGATTCAAGGGGAAAAGACTGGACGGAAAGGTCATCTATCTGTAGCCACTGAGATCTTAGAGGTAGCCCCTTCGCTATACATGGTTGAGCTGCGTAAGTCTCAAGGAGATACTCTGGAATTTCACAAGTTCTACAAAAATCTTGCTACTGGGCTGAAAGACATTGTTTGGAAAGCTGAGCCTATCGATGGAGGAAAGGATGGAGGAAAAGATGAAGGAAAGGATGGAGGAAAGGATGGAGGAAAAGATGGAGGAAAGGATGGTGCCAAAACATCAAAATAA 1437 0.4224 MTSRSGQGSSGSSRTRVGKYELGRTLGEGNFAKVKFARHVESRENVAIKILDKEKVLKHKMIDQIKREISTMKLIRHPNVIRMYEVMASKTKIYIVLEFVTGGELFDKIARSGRLKEDEARKYFQQLICAVDYCHSRGVFHRDLKPENLLLDANGVLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVIHNKGYDGAKADLWSCGVILFVLMAGYLPFEETNLTALYKKIYKAEFTCPPWFSSSAKKLINRILDPNPATRITFAEVVENDWFKKGYKPPVFEQPTVSLDDVNSIFSESLDSKDLVVERREEEGHVAPVTMNAFELISKSQGLNLSSLFEKQMGLVKRETRFTSKCSADEIISKIEKAAGPLGFDVKKNNCKLKIQGEKTGRKGHLSVATEILEVAPSLYMVELRKSQGDTLEFHKFYKNLATGLKDIVWKAEPIDGGKDGGKDEGKDGGKDGGKDGGKDGAKTSK* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0432 478 SMART serkin_6 20 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0432 478 Gene3D Kinase associated domain 1, KA1 318 443 - -
Vra5g0432 478 ProSiteProfiles Protein kinase domain profile. 20 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0432 478 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 14 448 - -
Vra5g0432 478 CDD STKc_SnRK3 19 274 - -
Vra5g0432 478 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Vra5g0432 478 MobiDBLite consensus disorder prediction 445 478 - -
Vra5g0432 478 PANTHER SERINE/THREONINE KINASE 14 448 - -
Vra5g0432 478 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Vra5g0432 478 Pfam Protein kinase domain 20 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0432 478 SUPERFAMILY Protein kinase-like (PK-like) 17 301 IPR011009 -
Vra5g0432 478 Pfam NAF domain 320 380 IPR004041 GO:0007165
Vra5g0432 478 CDD CIPK_C 324 439 - -
Vra5g0432 478 Gene3D Transferase(Phosphotransferase) domain 1 100 282 - -
Vra5g0432 478 Gene3D Phosphorylase Kinase; domain 1 9 99 - -
Vra5g0432 478 ProSiteProfiles NAF domain profile. 318 342 IPR018451 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0432 Vra-Chr5 4541487 4549911 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0432 3 445 CBL-interacting serine-threonine protein kinases AT1G01140 68.374 0.0 644
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vra5g0432 Pkinase 4.5e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0432 - - gmx:100788746 832.017