Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0428 ATGGGGAAGAAAAAGAAGCAGGTAGGAGAAACAAGTGAAGATAGAGGAGATCATAAGAAGACAGAAGATGAAAGCTCCAGATCATATGACAACGATACTTTGGGGTTTATATTAATGGCTCAAGATTTGAAGGATGAAGGGAACAAGCTGTTTCAGAAGCGGGATGTTGAGGGGGCTTTGGCAAAGTATGAGAAGGCCCTGAAATTGCTTCCAAGAAATCATCTTGATATTTCTTATTTGAGGAGTAACATGGCTGCCTGCTACATGCAGATGGGTCTTCGTGAGTATCCTAAAGCAATCAATGAATGCAATTTGGCTCTTGAAGCATCACCAAAATATAGTAAAGCTCTGATGAAGAGGGCAAGGTGCTATGAAGCTTTAAATAGGTTGGATTTTGCGCTGAGAGATGTTAGCACTGTTTTGAAGATAGAGCCAAATAATGTAATGGCATTGGAGGTCTCGGATAAGGTGAAGCATGCTCTTGAAGTTAAGGGATTAGTAGTAAACGATACGGAAATTGAGTTGCCTCCAGACTATGCTGGACCTCCTGATTTACGTCTGGAAAATGTCGACAAAGAAAAGATTCACAAGAAGAAGAAAAACAAAGAGAAGGTGAAGTCTACTGATAAAATTGAAGAAAAGAAAAGTGAGGAGAAATTAGATGAGAATAAAGCTGAGGACAGTCGGAAAGATAAAAAGGCTAAGAAATATAAAAAGAAGAAGGCCAAGGGAAAAGATGTTGAGAAAAAGGATGATGTTAAGGAAGTTATTGAAGAAAAAAGTAACGGTAGAAGTGACAATATACCTAAGAAAGCAGCAAAACTTGTTTTTGGCGAGGATATAAGATGGGCTGAATTACCAGTTAATTGCAGCCTCTTTCAGCTAAGGGAAATTATTTGTGATCGTTTCCCTAGACTAGGAGCAGTTCTTGTCAAATATAAGGACCAAGAGGGTGATCTGGTCACTATCACTTCTGATGAAGAATTAAGGTGGGCTGAAACAGGATCACAGGGTTCTGTTCGGCTGTACATAGTGGAAGTTAATCCAGAACATGATCCATTCTTTCTGAAGCTTAATGCAAAGAGTGGAGAAAAGGCCAGTATTGCTAATTCTCCTGTGAATGGATCTGTGGTGAAGGAAAAGGACATTATTTGCTCATCTTGCATCGAGGATTGGATAATTCAGTTTGCACAACTGTTCAAGAACCATGTTGGGTTGGAAGCTGACAGATATTTATATTTTCATGAATTTGGTATGAAGCTCTATTCAGAGGTTGTGGAGGAGACAATTATAAGTGAGGAAGCTCAAGGCCTGCTTGATGTTGCTGAAGGTAAGTTCCAAGAGATGGCAGCTCTAGCATTGTTCAATTGGGGAAATGTGCATATGTCCAGCGCAAGGAACAAAATTTATTTTACAGGAGATTCTTCTAAGGAGCATTTGCATGAACAAATCAGAAGTTTGTATGGATGGGCACACGAAGAATATGAAAAAGCTGGGGAGAAGTATGAAACAGCCATTGAAATTAAACCAGATTTGTATGAAGGCTTCTTGGCCCTAGGCCAACAGCTGTTTGAGCAAGCCAAGCTTTCTTGGAATTATGCACTCTGTTCTAAGGTAGATATATCAACATGGTCCTCCTCCACTGAGGTTCTTCAGCTTTACAACAGTGCTGAGGATAGTGTGGAGAAAGGAATGCTTATATGGGAAGAATTAGGAGAGCAGCAGTTGCTGGAAACTTCCAATCCGAAGGATATTTTATTACATTTGAAGGACATGGGATTGGACCGACTATTCAAAAATATGTCAGCACATGAAATCGCTACACAGGTGGCAGATACGAGGTCTCAAATGAATCTTCTGTGGGGTACCATACTGTATGAGCGCTCAATAGTGGAATTCATGTTAGGGCTACCGGGATGGAATGAAACTCTTGAAGTTGCAGCTGAGAAGTTTCAACTTGCTGGAACTTCTACAACAGATATATCTGTAATGTTGAAGAATCACTGTTCAAATAACTCGGTTGTAGACGGTATTGGATTCAACATTGAGGAAATAGTCCGACCATGGAATGAGATGTACAACGCTAAAAAGTTGCAGAAAGGTGTTCCATCATTCCGTTTGGAGCCCTTGTTTAGAAGAAGAATATCTAAAATATTCCATGCCTTTGAGCTTGTATGA 2178 0.3999 MGKKKKQVGETSEDRGDHKKTEDESSRSYDNDTLGFILMAQDLKDEGNKLFQKRDVEGALAKYEKALKLLPRNHLDISYLRSNMAACYMQMGLREYPKAINECNLALEASPKYSKALMKRARCYEALNRLDFALRDVSTVLKIEPNNVMALEVSDKVKHALEVKGLVVNDTEIELPPDYAGPPDLRLENVDKEKIHKKKKNKEKVKSTDKIEEKKSEEKLDENKAEDSRKDKKAKKYKKKKAKGKDVEKKDDVKEVIEEKSNGRSDNIPKKAAKLVFGEDIRWAELPVNCSLFQLREIICDRFPRLGAVLVKYKDQEGDLVTITSDEELRWAETGSQGSVRLYIVEVNPEHDPFFLKLNAKSGEKASIANSPVNGSVVKEKDIICSSCIEDWIIQFAQLFKNHVGLEADRYLYFHEFGMKLYSEVVEETIISEEAQGLLDVAEGKFQEMAALALFNWGNVHMSSARNKIYFTGDSSKEHLHEQIRSLYGWAHEEYEKAGEKYETAIEIKPDLYEGFLALGQQLFEQAKLSWNYALCSKVDISTWSSSTEVLQLYNSAEDSVEKGMLIWEELGEQQLLETSNPKDILLHLKDMGLDRLFKNMSAHEIATQVADTRSQMNLLWGTILYERSIVEFMLGLPGWNETLEVAAEKFQLAGTSTTDISVMLKNHCSNNSVVDGIGFNIEEIVRPWNEMYNAKKLQKGVPSFRLEPLFRRRISKIFHAFELV* 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0428 725 Pfam PB1 domain 274 345 IPR000270 GO:0005515
Vra5g0428 725 CDD PB1 278 344 - -
Vra5g0428 725 SUPERFAMILY TPR-like 40 528 IPR011990 GO:0005515
Vra5g0428 725 MobiDBLite consensus disorder prediction 1 28 - -
Vra5g0428 725 Gene3D - 272 346 - -
Vra5g0428 725 PANTHER PROTEIN CLMP1 2 724 IPR044517 -
Vra5g0428 725 MobiDBLite consensus disorder prediction 177 251 - -
Vra5g0428 725 Gene3D Tetratricopeptide repeat domain 38 164 IPR011990 GO:0005515
Vra5g0428 725 SMART PB1_new 270 347 IPR000270 GO:0005515
Vra5g0428 725 PANTHER PROTEIN PHOX3 2 724 - -
Vra5g0428 725 MobiDBLite consensus disorder prediction 205 232 - -
Vra5g0428 725 SMART tpr_5 40 73 IPR019734 GO:0005515
Vra5g0428 725 SMART tpr_5 114 147 IPR019734 GO:0005515
Vra5g0428 725 SMART tpr_5 78 113 IPR019734 GO:0005515
Vra5g0428 725 ProSiteProfiles TPR repeat profile. 114 147 IPR019734 GO:0005515
Vra5g0428 725 ProSiteProfiles TPR repeat profile. 40 73 IPR019734 GO:0005515
Vra5g0428 725 SUPERFAMILY CAD & PB1 domains 272 355 - -
Vra5g0428 725 Coils Coil 197 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0428 Vra-Chr5 4476594 4484734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0428 21 147 Calmodulin-binding Proteins AT3G25230 33.333 4.31e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0428 - - gmx:100820306 1079.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2320 7 43296016 43300567 Vra5g0428 5 4476594 4484734 PCT