Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0424 ATGTTGAAGGAGAAAGGAGGGAGCCGGCCCCCGTGGGTGGGGCTGGCCGCCGCCGTCTGGGTTCAGATCGCCGCCGGGAACACCCCCACCTTCCCACTTTATTCCCACTCCTTGAAATCAGTGCTGGGTTTCGACCAGCTCCACGTCACGCTCCTCGGTGTGGCCGTCGACGTCGGTGAAAACTTCAGCCTCCTCCCCGGCATCGCCTGCAACAAGTTCCCCCCTTGGCTCAACCTCCTCGTCGGTTCCCTCTCCGCCTTCCTCGGCTACGGCGTTGTCTACCTCGCCATCTCCCAGACCCTCCCATCCCTCCATTTCTTACTGCTATGGTTTTGTCTTCTTATTGCTGCTAACAGTACTGCGTGGTTCACCACCACGGTTCTGGTGACCAACATGAGAAACTTCCCTGCTAGCAGAGGCTCTGTCGCTGGGGTTCTGAAAGGTTATGGGGGACTTAGTGCTTCCGTTTTGACCGAGATTTACAGCATTCTGCTTCGTAACAGTTCCTCTAAGTACCTCCTGTTTCTTTCCCTTGGTATTCCTGCTATATGCTTGAGTATGATGTTTCTCGTTAGGCCCTGTACGCCGGCCACTGGTGATGACCCTGCGGAGCCTTACCATTTTCAGTTTGTCCAAGTTTCCAGTGTGATCTTGGGTGTTTACCTTCTTGTTAGTACCATACTTGGTAATGTCTACACGTTTAGCGATGCTCTTTCGTATGCTTTGGTGACCGTGATGGTTCTGCTTCTCATGGCTCCGCTTGCCGTCCCTTTGAAGATGACACTGTTTCCAAGGAATGGGACTAAATCAGAGCAACAAGTTGGATCTTCTGAGTTTCTAAGTCAAGGGAAAGATGAAAGTGCGGCGCCGCTGCTGGCATCTTCGTCGACGGGGGCACTTGGGAGTTTTAATGATCAGGATGATTTGCCTGAGGTTGCTGAGCTTCTTGCCTTGGGTGAGGGAGCTGTGAAGCAGAAGAAGAGAAGGCCTAAACGTGGAGAAGATTTTAAGCTAACTGAGGCTATAGTGAAGGCTGATTTCTGGCTTCTGTTTTTGGTCTACTTTGTTGGCGTCGGCACTGGGGTTACTGTTCTCAACAATCTGGCACAAATAGGTATTGCCCGAGGGGCGGAAGACACCACCACCTTGCTGTCAATTTTCAGCTTTTGCAATTTTCTGGGGCGGCTTGGTGGAGGAGTTGTATCAGAACATTTTGTCAGGACAAAATCACTTCCAAGAACTGTGTGGATGTTGTGCACGCAGATAATTATGCTCATTGTATACCTTCTGTTTGCCTATGCTATCAGTGGAACCCTTTACCCTGCAGTTGCATTCCTCGGTGTCTGCTATGGCGTGCAACTCTCCGTGATCGTCCCCACTGTTTCTGAAGTTTTTGGTCTGAAGCACTACGGTGTACTGGGCAGCGTCATTGGGTTGGGGAATCCAATTGGTGCAGTGCTCTTTTCTGTTCTGCTAGCAGGGAACGTATACGATAGTGAGGCAGCAAAGCAGCATGGTATAGACCTTCTTGATTCTGGTGTTTCGTGCCTCGGTCCAAATTGCTTTAAGCTTACCTTTCTCATTCTTGCTGGGGTATGTGCTGTTGGCATCATCTTGAACGTTATTGTGACTTTGAGAATTAAGCCTGTTTATCGAATGCTTTATGCTGGAGGCTCTTTCAGGCACCCTCAGACATCTTCAAGTCACTAA 1710 0.5023 MLKEKGGSRPPWVGLAAAVWVQIAAGNTPTFPLYSHSLKSVLGFDQLHVTLLGVAVDVGENFSLLPGIACNKFPPWLNLLVGSLSAFLGYGVVYLAISQTLPSLHFLLLWFCLLIAANSTAWFTTTVLVTNMRNFPASRGSVAGVLKGYGGLSASVLTEIYSILLRNSSSKYLLFLSLGIPAICLSMMFLVRPCTPATGDDPAEPYHFQFVQVSSVILGVYLLVSTILGNVYTFSDALSYALVTVMVLLLMAPLAVPLKMTLFPRNGTKSEQQVGSSEFLSQGKDESAAPLLASSSTGALGSFNDQDDLPEVAELLALGEGAVKQKKRRPKRGEDFKLTEAIVKADFWLLFLVYFVGVGTGVTVLNNLAQIGIARGAEDTTTLLSIFSFCNFLGRLGGGVVSEHFVRTKSLPRTVWMLCTQIIMLIVYLLFAYAISGTLYPAVAFLGVCYGVQLSVIVPTVSEVFGLKHYGVLGSVIGLGNPIGAVLFSVLLAGNVYDSEAAKQHGIDLLDSGVSCLGPNCFKLTFLILAGVCAVGIILNVIVTLRIKPVYRMLYAGGSFRHPQTSSSH* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0424 569 SUPERFAMILY MFS general substrate transporter 223 549 IPR036259 -
Vra5g0424 569 Pfam Nodulin-like 11 258 IPR010658 -
Vra5g0424 569 SUPERFAMILY MFS general substrate transporter 14 196 IPR036259 -
Vra5g0424 569 PANTHER NODULIN-LIKE/MFS TRANSPORTER 2 569 - -
Vra5g0424 569 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 2 569 - -
Vra5g0424 569 Gene3D MFS general substrate transporter like domains 342 550 IPR036259 -
Vra5g0424 569 CDD MFS_Mch1p_like 10 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0424 Vra-Chr5 4433205 4435967 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0424 2 569 Nodulin-like Gene Family AT1G80530 54.657 0.0 627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0424 - - gmx:100794012 885.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2327 7 43334916 43338524 Vra5g0424 5 4433205 4435967 PCT