Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0419 ATGGACCGTATTAGGCGCATTGTTGAAGTAGTACCTTCGATAGCCGGGCAGCATCAGAGTCAGCCACAAGTGGAAGGAATGCAGCAGCAGAGAGTTGAGGAAAGAATAGATGAAGGTGGGAAAAGGCGCATGATGAAAGGAGTGAAACTAATAGCTAAAGCATTGGAGGATGTGGAAAGGTCTGCCCGTAAGAAAGCGAGTGGCAGAGCAGGTTTTTTTGATTGCAACATATGCCTCTCCACAGCAAAAGATCCTGTCTTGACTTGCTGTGGTCACATGTTTTGCTGGCCATGCTTTTATCACTTGCCATTATGTTCCTATGTAAATGCAAGGTTGTGCCCTGTTTGTGATGGAGAGGTCATTGAAACCAACATTACTCCAATTTATGGTAATTCCAGTGGCAGTGACGATTCTGATGTAGCTTCTTCGATAGTTCCTCCTCGACCTGCTGCACCCAGAATTAACAGTTTTAGTTATTACTTTTAG 486 0.4444 MDRIRRIVEVVPSIAGQHQSQPQVEGMQQQRVEERIDEGGKRRMMKGVKLIAKALEDVERSARKKASGRAGFFDCNICLSTAKDPVLTCCGHMFCWPCFYHLPLCSYVNARLCPVCDGEVIETNITPIYGNSSGSDDSDVASSIVPPRPAAPRINSFSYYF* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0419 161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 132 IPR013083 -
Vra5g0419 161 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 16 157 - -
Vra5g0419 161 ProSiteProfiles Zinc finger RING-type profile. 75 117 IPR001841 -
Vra5g0419 161 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 16 157 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vra5g0419 161 SMART ring_2 75 116 IPR001841 -
Vra5g0419 161 Pfam Zinc finger, C3HC4 type (RING finger) 75 116 IPR018957 GO:0046872
Vra5g0419 161 SUPERFAMILY RING/U-box 74 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0419 Vra-Chr5 4362527 4365044 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0419 25 157 C3H Transcription Factor Family AT3G58030 45.255 1.79e-26 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0419 K10666 - gmx:100794016 148.288