Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0403 ATGGCTGGAATGCTTCCAGGAGTTGAATGTGCAAGAAGAAGAAGATTCCATAGTTGCTTGGATTCAAACTCAACTTCTTTAGCTTCACATGTATCCACAAGGCGCTCTTCTTTTGGTTTGTATGCAAGTAACCTTTCCTTGTCTACTTCACAGGTGTGTCAAAGAGGCTTGTTATACCAGACACACCCAGATGAGGATATGGCAGGAGCGGCCAGAGAAGCCAGACAGAGATTGGATGACAAGTTTAGAGCACAAAGGATGTCAGATAACAAAAGGCAAAAGAGTACAACATGTGTGGAGGGTGGAAGAAGAGGCATGACAGAGTTGCAGACAGAGGTATATGGGTCAAAGAAAAGTGGTGGAAGGAAATTCAGTTGGAGTAGATGGAGCTGGAAGGCCTCTGAACAAGAGGACTGTGCAGTGTGCTTGGAATCATTCAGGGTTGGAGAGACACTGATCCATCTTCCTTGTGCACATAAGTTCCATGACAGATGCTTGAAACCATGGTTGGAAAACAATTCTCATTGTCCATGTTGCAGAACAACAATTCTTTCCCTCTCTATTTAA 567 0.4392 MAGMLPGVECARRRRFHSCLDSNSTSLASHVSTRRSSFGLYASNLSLSTSQVCQRGLLYQTHPDEDMAGAAREARQRLDDKFRAQRMSDNKRQKSTTCVEGGRRGMTELQTEVYGSKKSGGRKFSWSRWSWKASEQEDCAVCLESFRVGETLIHLPCAHKFHDRCLKPWLENNSHCPCCRTTILSLSI* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0403 188 Pfam Ring finger domain 138 180 IPR001841 -
Vra5g0403 188 SMART ring_2 139 179 IPR001841 -
Vra5g0403 188 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 1 182 - -
Vra5g0403 188 CDD RING-H2_PA-TM-RING 138 180 - -
Vra5g0403 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 185 IPR013083 -
Vra5g0403 188 ProSiteProfiles Zinc finger RING-type profile. 139 180 IPR001841 -
Vra5g0403 188 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 182 - -
Vra5g0403 188 SUPERFAMILY RING/U-box 126 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0403 Vra-Chr5 4200308 4202138 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0403 1 83 C3H Transcription Factor Family AT2G15580 48.421 1.75e-18 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0403 - - gmx:100527583 312.768