Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0402 ATGGCGTTTGAGCAAACCTCTGTTCCTGGCGGCGATGTTGTGCGGCCACTGAATTCAGTAGCTCGGAGTGTGGCGGAAGAGTCTCTCGTTTTGCCGGTATCTACGGCGGTTCCTGGCGCGCTGCCGATTTTCTATCCTGCGTCTGTCTCTGATGCTGGCTTGGTTGGAATGGGGTATGGGAATGTGACTTCGGGAGGTGGCGGTGGTGCTGCCACGTGGTGTGTGCGCCCCGCTGTGCCAGTTCATAATCACAATCCCTCTGTGAATCCTGCTGTTGGATTTGTTCATGCTCCTAGTTTTCCCAATAGAGTTGGTGCTGTAGGTGGCAATGCTGTTGATGTTTCAAGTAGTTTTGTGGCTGCTACTCATGGGTTTCCTATGAATTTGGGGGGTAACTGGGTTGCATCGGGTAATGGCCTAGATAGTATTAATAGTAGTGATGTTAATAATAATAATAATAATAATAATAATAATAATAATAATAATTACAACAACAATGCTGTTCCGGGGAACAGCAGAGTCATTAGCAATTCTGGTGATCATGTGTGTAGTATTGGGGTTGGGTCCATTTCCAATACACCTTCAAGCCAGCGGACAGATCAGGCGATTGAGGAGGGTGGGGATGATTCAATTTCAGGGCGGAAAATGAAGTTGATGTGCAGTTATGGTGGGAAGATTTTGCCTAGGCCTAGTGATGGGATGTTGAGATATGTTGGAGGGCAGACAAGGATCATAAGTGTTAAGAGAGATGTGAGTTTTAATGATTTGGTGCAGAAGATGGTTAGTACATTTGGGCAGCATGTGGTTATCAAATATCAGCTCCCTGATGAGGATCTGGATGCATTGGTTTCGGTTTCCTGCCCTGATGATCTGGAGAATATGATGGAGGAGTATGAGAGGTTGATTGAGAGGTCTCCTGACGGTTCTCCCAAGTTAAGGGTCTTTCTTCTTTCTTCTTCAGAACTCGATCCTTCTGGTGTAGCACAGTTTGTAAATTTGCATGATGGTGGACTGAAATATGTTGAAGCTGTGAATGGAATTGCTGATGGGATTGGTGGCAAACTAACAAGGAAAGCGAGCTATACAAGCGCAGTATCTACTCAGAATTCTGATTTTAGCGGGATAGATGCTCTTGATAGCTTGAATGCTGCTCAAGGGGATGTCAGAGGGGATGTCAGTGGGGTACCTGTACCTATGCCCAGTTCTTTATCACCTGAGGGGAACGTGGCTGCTTCTCATGATGGTACCTTAAATTCTGTGGTTCCTGAGCCTGGTACATCTTACACAGAGGCCTCTGCGGTTCCACCGGGCATTCCTGTAACAAATTATGGTCCAACTCACATTCCACCTCTCCAGAATGAGGTTGAGTTAGAAAAGTCTGTACCTGTTACTTTTTCTCAGACTCAATTTGGGTTACAACAATCTGGTTTGGAAATTCCACCTTCTACACCTTTGCAAACTTCTTTTGATCATCGCCAGGAGGTTATGAACCATGTTGATTATGTCCAGCTTCCTCCCCATATGGGATTCCTGAATCCTCAATTTCTAGGTAAGCCTGGATCCATCTACTCCCAACATCAATTTCATGATAATACTTCTCGTTTTGGGTCCCATCAGGTAATCCCTGCAGTGCAAATGACCATGACTCAGCCATTTTCTCATGCTGCTTTAAGACCCAGTGTTATTCAACCACAAGCATTCATGCAACCTCAGCAAAACCGTTTGGACCAATATAATGATGAAAATGCTTCAGGGCTAAGGATTCACCAGGTTCCTGCTGAACAAAGTTACAACACATTTCAGGTTCAAGTCCCTTTTGGAGGTAATTATGGCTGGGTCCAGGTTCCTTCTGCAGACCATGTGATCTTTTCTGATGCATTTGTACCTCAACAACCAATGATGATCCCTGAGAAACTCCAACGAGTGGAGGACTGTTATATGTGTCAGAAAAAGCTGCCTCATGCACATTCAGATCCTGTGGTTCAGGATCAGCGAAATAGCTGTGCTGGTCCAATTTCTGATTCAATCCAAAGTTTCTATAGTCTCCCTACGGAGGACAATTCTAGGGCTCAAGCAACAAATATGGTTTTGGTGTCTGCACCAATGAAGGATGACAATGTTGAACAAGTAGTTGTGACAAGACCCAAGGTCTTTAGCAAATTGGATACTCCAGCTGGAGCAGCTTGTACAGACACAGCTGGTCTTTCTCTGGAGCTTGAAAGTGAGACGGCTTTTATACAAAAGCTGGACAGGTCTGATCATCCCAGGAATGCAGTTATCCAGGAAGCTGTTGTAAGAACAGGAGAAAAACAGTTGCCAAGTGATGGGCTGGTAGCACCGCATTCTTATCGTGATGATATCACCCGCCAGCATATGGTGCCACTTGATAGCAGGTCTAAAGAGGATGCTCTTGTGAATAAACCTGTTACTAATGATATACCTTTAGTTGGTGGCACATCTGTTGAAAATTCTGACTGTATGGTTCAAGAGTGTCCAACAGAATATACAAATGAACTTTGTAGCACTACTTCAAAAGCAGATGCCATGGAGAATTGGATAGCACAAGATCTTCTCAAACCTATTGATGGAAGAATAGACAACCTGAAAATAGGTAATCCTGAAAATTTTCTAAATAATGATAAATTTGATTACAGCACTCAACATGTTGCAGAGAAGAAAGGGGTCCCTCTAGATAACAATATTGGGAAGTCAAAGTTGATCACTGATGCTGATCAAATTAATATGGTAGATTTGCTTCCTAGTTCTACTGTGGAAATTTCATATGGGAATAATTCCAGGCCAGTGGAATATAATGAGGTTATACAAACCCCTGTTTGGGGCATACCTGGATCAAATCCTCAGCCAAAGAGTGGAAACCATCACGGGGAGGATGCAGTTTTATCTTCAGTTCCTCCATCTGCTAGATTTGGAGAGGTGAAGGATTCTTCAAACTCACTTTTTAGCAATCAAGATCTATGGAATATACACAGTTCATACTTTCCACCTCCGAGACCTAACAAAGTTACATTGAAGAAAGAAACCTATTCAAATAAGGATCAAGTTGGTGAGAATCTTGGCATCAATGGGGAACAAAATCTGGAAGCTCAAATAGAGAATGGCCTCTATCAAACACTCCAACAGAATTTAACTTTCGAAGAAGCTCGATCTGTCGCCAAGGTCTCATCAGAAGACCGACAACTTCAAGCCGTTGCTGAAGGTTTAGCTGCTTCCGTTCTGCACTCAAGCACTTCTTCAAATCTTGATTTGAATGTCAAAGATGTGTCCCATCACGAGGACATTGGCGATGGAGATGTTCAAAATAATCTAATAGATATACAGCATAAAGATAAAATTCAGGATCTCAAAAACAAGCTCCCAGAGAAATTAAATTTTGGCTTTCCAGCATCAGATGTTGGAGCTTTGCAGATTATAAAAAATTGTGACCTTGAAGAGCTGATAGAGTTGGGTTCTGGGACCTTTGGGACTGTATATCATGGAAAATGGAGGGGCAGTGATGTGGCAATAAAGCGGATTAATGATAGGTGTTTTGCAGGAAAGCATTCGGAGCAAGAGCGCCTGAGAGCAGACTTTTGGAATGAGGCAATCAAGCTTGCTGACTTGCATCATCCAAATGTGGTAGCATTCTATGGTGTTGTGCTTGATGGCCCCGGAGGTTCTGTGGCAACAGTGACGGAGTATATGGTAAATGGTTCTCTAAGAAATGCGTTGCAGAAGAATGGGAGGAATCTTGACAAGCGCAAGCGGCTGTTGATTGCGATGGATGTGGCCTTTGGCATGGAGTACTTGCATGGAAAAAATATAGTACACTTTGACTTGAAAAGTGACAACTTGCTCGTGAATCTCCGAGATCCACATCGTCCGATATGCAAGGTTGGTGATTTGGGTCTGTCCAAAGTGAAATGCCAGACTTTAATATCCGGCGGAGTTAGAGGAACTCTACCTTGGATGGCCCCAGAACTGCTGAATGGGAGCAGTAGTCTTGTATCAGAGAAGGTTGATGTGTTTTCGTTTGGTATTGTTATGTGGGAACTGCTCACGGGAGAAGAGCCGTATGCTGATTTGCACTATGGGGCCATTATAGGTGGTATAGTAAACAACACTTTAAGACCTCCAGTTCCAGAATCTTGCGATCCAGAATGGAGACTGCTAATGGAGATGTGCTGGTCATCCGAACCATCAGAAAGACCTTCCTTCACTGAGATTGCCAATGGATTACGTTCCATGGCAACCAAGATTTCTCCGAAAGGACAAAATCAACAGCAGCAACCCGCCTCATCTCTGAGTCAAGCACAGAAATAA 4320 0.437 MAFEQTSVPGGDVVRPLNSVARSVAEESLVLPVSTAVPGALPIFYPASVSDAGLVGMGYGNVTSGGGGGAATWCVRPAVPVHNHNPSVNPAVGFVHAPSFPNRVGAVGGNAVDVSSSFVAATHGFPMNLGGNWVASGNGLDSINSSDVNNNNNNNNNNNNNNYNNNAVPGNSRVISNSGDHVCSIGVGSISNTPSSQRTDQAIEEGGDDSISGRKMKLMCSYGGKILPRPSDGMLRYVGGQTRIISVKRDVSFNDLVQKMVSTFGQHVVIKYQLPDEDLDALVSVSCPDDLENMMEEYERLIERSPDGSPKLRVFLLSSSELDPSGVAQFVNLHDGGLKYVEAVNGIADGIGGKLTRKASYTSAVSTQNSDFSGIDALDSLNAAQGDVRGDVSGVPVPMPSSLSPEGNVAASHDGTLNSVVPEPGTSYTEASAVPPGIPVTNYGPTHIPPLQNEVELEKSVPVTFSQTQFGLQQSGLEIPPSTPLQTSFDHRQEVMNHVDYVQLPPHMGFLNPQFLGKPGSIYSQHQFHDNTSRFGSHQVIPAVQMTMTQPFSHAALRPSVIQPQAFMQPQQNRLDQYNDENASGLRIHQVPAEQSYNTFQVQVPFGGNYGWVQVPSADHVIFSDAFVPQQPMMIPEKLQRVEDCYMCQKKLPHAHSDPVVQDQRNSCAGPISDSIQSFYSLPTEDNSRAQATNMVLVSAPMKDDNVEQVVVTRPKVFSKLDTPAGAACTDTAGLSLELESETAFIQKLDRSDHPRNAVIQEAVVRTGEKQLPSDGLVAPHSYRDDITRQHMVPLDSRSKEDALVNKPVTNDIPLVGGTSVENSDCMVQECPTEYTNELCSTTSKADAMENWIAQDLLKPIDGRIDNLKIGNPENFLNNDKFDYSTQHVAEKKGVPLDNNIGKSKLITDADQINMVDLLPSSTVEISYGNNSRPVEYNEVIQTPVWGIPGSNPQPKSGNHHGEDAVLSSVPPSARFGEVKDSSNSLFSNQDLWNIHSSYFPPPRPNKVTLKKETYSNKDQVGENLGINGEQNLEAQIENGLYQTLQQNLTFEEARSVAKVSSEDRQLQAVAEGLAASVLHSSTSSNLDLNVKDVSHHEDIGDGDVQNNLIDIQHKDKIQDLKNKLPEKLNFGFPASDVGALQIIKNCDLEELIELGSGTFGTVYHGKWRGSDVAIKRINDRCFAGKHSEQERLRADFWNEAIKLADLHHPNVVAFYGVVLDGPGGSVATVTEYMVNGSLRNALQKNGRNLDKRKRLLIAMDVAFGMEYLHGKNIVHFDLKSDNLLVNLRDPHRPICKVGDLGLSKVKCQTLISGGVRGTLPWMAPELLNGSSSLVSEKVDVFSFGIVMWELLTGEEPYADLHYGAIIGGIVNNTLRPPVPESCDPEWRLLMEMCWSSEPSERPSFTEIANGLRSMATKISPKGQNQQQQPASSLSQAQK* 1440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0402 1439 MobiDBLite consensus disorder prediction 188 208 - -
Vra5g0402 1439 PANTHER SERINE-THREONINE PROTEIN KINASE 183 962 - -
Vra5g0402 1439 PANTHER SERINE-THREONINE PROTEIN KINASE 979 1419 - -
Vra5g0402 1439 SUPERFAMILY Protein kinase-like (PK-like) 1144 1410 IPR011009 -
Vra5g0402 1439 ProSitePatterns Protein kinases ATP-binding region signature. 1155 1186 IPR017441 GO:0005524
Vra5g0402 1439 MobiDBLite consensus disorder prediction 144 171 - -
Vra5g0402 1439 Gene3D Transferase(Phosphotransferase) domain 1 1237 1439 - -
Vra5g0402 1439 Gene3D - 236 319 - -
Vra5g0402 1439 Gene3D Phosphorylase Kinase; domain 1 1143 1236 - -
Vra5g0402 1439 PRINTS Tyrosine kinase catalytic domain signature 1231 1244 IPR001245 GO:0004672|GO:0006468
Vra5g0402 1439 PRINTS Tyrosine kinase catalytic domain signature 1268 1286 IPR001245 GO:0004672|GO:0006468
Vra5g0402 1439 PRINTS Tyrosine kinase catalytic domain signature 1339 1361 IPR001245 GO:0004672|GO:0006468
Vra5g0402 1439 PRINTS Tyrosine kinase catalytic domain signature 1383 1405 IPR001245 GO:0004672|GO:0006468
Vra5g0402 1439 ProSiteProfiles Protein kinase domain profile. 1149 1416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0402 1439 SUPERFAMILY CAD & PB1 domains 231 322 - -
Vra5g0402 1439 Pfam PB1 domain 235 315 IPR000270 GO:0005515
Vra5g0402 1439 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 979 1419 - -
Vra5g0402 1439 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 183 962 - -
Vra5g0402 1439 Pfam Protein tyrosine and serine/threonine kinase 1154 1410 IPR001245 GO:0004672|GO:0006468
Vra5g0402 1439 MobiDBLite consensus disorder prediction 1416 1439 - -
Vra5g0402 1439 SMART PB1_new 230 317 IPR000270 GO:0005515
Vra5g0402 1439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1274 1286 IPR008271 GO:0004672|GO:0006468
Vra5g0402 1439 CDD PB1_UP2 219 316 - -
Vra5g0402 1439 CDD STKc_MAP3K-like 1155 1410 - -
Vra5g0402 1439 SMART serkin_6 1149 1420 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0402 Vra-Chr5 4171133 4178897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0402 214 694 MAP Kinase Kinase Kinase AT3G46920 39.344 1.53e-81 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Vra5g0402 PK_Tyr_Ser-Thr 5.5e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0402 - - pvu:PHAVU_009G209700g 2472.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2463 7 44899718 44906534 Vra5g0402 5 4171133 4178897 PCT
Vra7g2341 7 43506885 43514654 Vra5g0402 5 4171133 4178897 PCT