Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0400 ATGGCTTTTCACGACCATATGGCGCACGAAATCACGTTTCAGCCCTTCACGGAGGAGCAGCAGATGGGTCAGGGCAGAGACATGCAGCGCCTGCTGCCGCTCTCTGCCGGAGCACCCACGTGGCTCAACGGCAGCAACGCGGCCACGCTTCGGCAGCAGAATTTTCTCCACCTGCAACCGGAGTCGGCGACGGCGCAGCCTAACGACGACGTTCGAGGTGGCATAGATCGGAACCGGACGGAGAGCAACTCGGAACCGGATGATTTGGCGGAATACAAAGCAGACATTCTGGGACACCCTCTTTACGATCAACTCCTATCGGCTCACGTCTCGTGTCTGAGGATCGCCACGCCCGTTGACCAGCTTCCACGGATCGACGCGCAGCTTCAGCAGTCGCAGCGCGTTGTTGACAAGTACTCTGGCCTCGGAAACGGCGTCGTGGATGACAAAGAGCTTGATCAATTCATGACGCATTATGTTATACTGCTCTGTGCTTTCAAAGAACAACTGCAACAACATGTCCGTGTTCATGCCATGGAAGCTGTCATGGCTTGTTGGGAGCTTGAGCAATCTCTACAAACCTTGACTGGTGTATCTCCCGGAGAAGGAACGGGTGCAACGATGTCAGACGATGAAGAAGACCAGGCTGAGAGTAATGCCAACTTATACGAAGGAAGCATGGATGGTGCTGATAGTCTCAGCTTTGGACCTCTTGTTCCCACAGAAACTGAAAGATCTTTGATGGAACGTGTTAGGCAGGAGTTGAAGCATGAGCTAAAACAGGGTTACAAGGAGAAGATTGTCGACATAAGAGAAGAAATTCTACGAAAGAGAAGAGCGGGGAAGCTCCCAGGTGACACCACTTCCCTTTTAAAAGCTTGGTGGCAGTCACATTCCAAATGGCCATATCCAACAGAAGAAGACAAGGCAAGGTTGGTGCAGGAAACAGGCTTGCAACTAAAGCAGATAAACAACTGGTTCATAAATCAAAGGAAAAGGAATTGGCATACGAATCCTTCGTCTTCTAGTGGCTCCAAAAGCAAACGCAAGAGTAGTGGTGCAGGTGAAACAAGTAACCAGAGCTTCATGTGA 1092 0.5101 MAFHDHMAHEITFQPFTEEQQMGQGRDMQRLLPLSAGAPTWLNGSNAATLRQQNFLHLQPESATAQPNDDVRGGIDRNRTESNSEPDDLAEYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVDKYSGLGNGVVDDKELDQFMTHYVILLCAFKEQLQQHVRVHAMEAVMACWELEQSLQTLTGVSPGEGTGATMSDDEEDQAESNANLYEGSMDGADSLSFGPLVPTETERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSSGSKSKRKSSGAGETSNQSFM* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0400 363 CDD homeodomain 277 338 IPR001356 GO:0003677
Vra5g0400 363 SMART HOX_1 276 341 IPR001356 GO:0003677
Vra5g0400 363 Pfam KNOX2 domain 146 196 IPR005541 GO:0003677|GO:0005634
Vra5g0400 363 MobiDBLite consensus disorder prediction 198 217 - -
Vra5g0400 363 MobiDBLite consensus disorder prediction 331 363 - -
Vra5g0400 363 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 22 356 - -
Vra5g0400 363 SUPERFAMILY Homeodomain-like 276 340 IPR009057 -
Vra5g0400 363 MobiDBLite consensus disorder prediction 59 87 - -
Vra5g0400 363 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 22 356 - -
Vra5g0400 363 ProSiteProfiles ELK domain profile. 254 274 IPR005539 GO:0003677
Vra5g0400 363 MobiDBLite consensus disorder prediction 72 87 - -
Vra5g0400 363 Pfam KNOX1 domain 92 133 IPR005540 GO:0003677|GO:0005634
Vra5g0400 363 Pfam Homeobox KN domain 294 333 IPR008422 GO:0003677|GO:0006355
Vra5g0400 363 SMART KNOX2_2 142 197 IPR005541 GO:0003677|GO:0005634
Vra5g0400 363 SMART ELK_2 254 275 IPR005539 GO:0003677
Vra5g0400 363 Gene3D - 280 357 - -
Vra5g0400 363 SMART KNOX1_2 90 134 IPR005540 GO:0003677|GO:0005634
Vra5g0400 363 Pfam ELK domain 254 275 IPR005539 GO:0003677
Vra5g0400 363 ProSiteProfiles 'Homeobox' domain profile. 274 337 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0400 Vra-Chr5 4159506 4164754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0400 90 358 Homeobox Transcription Factor Family AT5G11060 82.418 1.27e-164 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vra5g0400 KNOX2 2.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0400 - - gmx:100816347 688.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2343 7 43516939 43522267 Vra5g0400 5 4159506 4164754 PCT