Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0391 ATGCAACAAAACAATAAAATGAAATATGCACACTCTTATTTTATTCTGACACCTTTGCTTTTGCCTTTGCTTAGGGTACATACAGTTGTCCCTCTCCCTTGTGCTATTCAAGTTCCAATGGAGATTTTCAAGTGTTTCTACATCAATCTTCTTGCTACCTTCATCATATCAACAGTTTTAGCAATCGACCCTTACTCACAAGCACTTCTCAGCCTGAAAGATGAACTTGTAGATGATCATAACAGCTTGAGCAACTGGGTGGTACCCTCAGCAGCAAAATTAACTGGGAAATACTATGTGTGTTCTTGGTCAGGTGTCAAGTGTGACAATGGCTCAACCACTGTAACTTCTATAGACCTTTCCATGAAGAAACTGGGAGGTGTTTTGTCAGGGAAGCAATTCAGCATCTTCACAAACCTCACTAATCTCAACCTCAGCTACAATTTCTTCTCAGGGCAGCTTCCAGCTGAGATTTTCAACCTCTCTAGCCTCACAACCCTGGACATCAGCAGAAACAACTTTTCTGGTTCCTTCCCTGGTGGAATTACTAGGCTCCAAAATTTGGTTGTACTTGATGCCTTTAGCAACAGTTTCTCAGGGTCATTGCCTGCTGAATTTTCACAGCTAGCAAACCTTAAAGTTCTCAATCTAGCTGGGAGCTACTTCAGAAATTCAATTCCATCTGAATACGGTTCTTTCAAAAGCCTTCAGTTTCTTCATCTTGCCGGAAATTCTCTTTCAGGAAGTATACCTCCTGAACTGGGTAACCTCAAAACAGTGACCCATATGGAGATTGGGTACAACCTATACCAGAGTTTTATTCCACCTGAACTTGGTAACATGAGTCAGCTTCAGTATCTTGACATAGCAGGAGCAAATCTATCAGGCCACATACCAAAGCAACTCTCCAACCTCACCAGTTTGCAATCACTTTTCCTTTTCAGAAACCAGCTCACAGGAACAGTGCCAAGTGAGCTCAGTAACATTGAATCCCTGGCAGATTTAGATCTCTCTGATAACTTCCTCTCAGGGTCCATTCCCGAAAGCTTCTCAATGTTAAAGAACCTAAGACTACTCAGTCTCATGTACAATGACATGAGTGGCATTGTTCCTGAAGGAATTGCTCAACTCCCATCCTTGGAAACTCTTCTCATTTGGAACAATCGCTTCTCTGGGTCACTTCCTCAGAGCTTAGGGAGGAACTCCAAACTCAAGTGGGTGGATGCTTCCACAAACAATTTAGTTGGAAGCATACCACCTGATATCTGTGTGAGTGGAGTACTGTTTAAGCTAATACTGTTTTCAAACAAATTCAAAGGCGATCTCTCATCAATCTCCAACTGTTCTTCACTCGTTCGCCTTCGCCTAGAAGATAATTCATTTTCAGGAGAAATCACTTTGAAATTCAGCCATCTTCCTGATATCGTATACGTCGATCTCTCCAGAAACAACTTTGTTGGTGGCATTCCCTCGGATATTTCTCAAGCCACTCAACTGGAGTATTTTAATGTCTCTTATAATCTGAAATTAGGAGGTACCATCCCTGCACAAACGTGGTATTTGCCCCAACTTCAAAATTTTTCAGCATCTTCTTGTGGTATTTCTGGTGATCTTCCCCTATTTGAGTCCTGCAAATCAATTTCAGTTATTGATCTTGATAACAATAACTTATCTGGGATCATCCCAAACAGTGCTTCCAAATGTCGAGCTCTTGAGAAAATCAACCTATCCTACAATAGCTTAACAGGTCATATACCTGATGAGCTTGCAAATATTCCTGTTCTTGTTGTGGTGGACCTATCAAACAACAAGTTCAATGGCCTCATACCTGCTGAGTTTGGCAGTTCTTCAAGTTTACAACTTCTGAATGTGTCTTTTAACAATATCTCCGGTTCAATACCCACAGGAAAGACATTCAAATTGATGGAAAAAAGTGCATTTATCGGAAATTCAGAGCTATGTGGAGCACCCCTGAGATCATGTCCTGATTCAGTTGGAATATTGGGCAGAAAAGGCCCGTGGAAGATTACACATATTGTGCTACTCTCTGTAGGGTTGCTAATAGTTCTTCTGGGATTAACTTTTGGAATATTATATTTGAGAAGGGGGATAAAAAGCCAATGGAAGATGGTATCATTCGTGGGTCTCCCTCAATTCACAGCAAATGATGTTTTGACGAGCCTCACTGCCACAAAACCAACAGAAGTTACATCACCATCACCAGCAGTTACAAAGGCTGTTCTGCCGACAGGAATAACAGTTTTGGTGAAGAAGATGGAGTGGGAAGCTAGGAGCATCAAGGTTGTGTCAGAATTCATAACGAGACTGGGAAATTCAAGGCACAAGAATTTAATCAGACTACTGGGGTTTTGCCACAACCAGCATTTAGTCTATCTTTTGTATGATTACTTGCCCAATGGGAATTTAGCTGAGAAAATGGAAATCAAATGGGATTGGGCAGCAAAATTCAGAACAGTTGTTGGAATTGCAAGGGGACTCTGCTTTCTTCACCATGAATGTTACCCAGCAATACCCCACGGAGACTTGAAGCCTACCAACGTTGTATTTGACGAAAACATGGAACCCCATTTGGCAGAATTTGGGTTCAAACAGGTTTTGAGGTTGAGCAAAGGCTCATCACCCACCACAACCAAGTGGGAAGCAGAATATGATGCTGCCACAAAAGAAGAACTGCGAATGGATATCTACAATTTTGGGGAGATGATTCTGGAAATATTAAGTGGCGGAAGGTTGAGAAATGCAGGAGGCAGCATACACAGCAAACCATGGGAGGATCTCTTGAGAGAAATTTATAATGAGAATGAAGCAAAGTCCGCAAGCTCATTGGAAGAGATTAAACTGGTTCTTGAGGTTGCTATGTTTTGCACCAGAAGCAGGTCGTCAGATCAGCCATCAATGGAAGATGTTCTGAAGCATCTGTCAGGCCTAAAGCATATAGATGAGGGGCAATAA 2973 0.4178 MQQNNKMKYAHSYFILTPLLLPLLRVHTVVPLPCAIQVPMEIFKCFYINLLATFIISTVLAIDPYSQALLSLKDELVDDHNSLSNWVVPSAAKLTGKYYVCSWSGVKCDNGSTTVTSIDLSMKKLGGVLSGKQFSIFTNLTNLNLSYNFFSGQLPAEIFNLSSLTTLDISRNNFSGSFPGGITRLQNLVVLDAFSNSFSGSLPAEFSQLANLKVLNLAGSYFRNSIPSEYGSFKSLQFLHLAGNSLSGSIPPELGNLKTVTHMEIGYNLYQSFIPPELGNMSQLQYLDIAGANLSGHIPKQLSNLTSLQSLFLFRNQLTGTVPSELSNIESLADLDLSDNFLSGSIPESFSMLKNLRLLSLMYNDMSGIVPEGIAQLPSLETLLIWNNRFSGSLPQSLGRNSKLKWVDASTNNLVGSIPPDICVSGVLFKLILFSNKFKGDLSSISNCSSLVRLRLEDNSFSGEITLKFSHLPDIVYVDLSRNNFVGGIPSDISQATQLEYFNVSYNLKLGGTIPAQTWYLPQLQNFSASSCGISGDLPLFESCKSISVIDLDNNNLSGIIPNSASKCRALEKINLSYNSLTGHIPDELANIPVLVVVDLSNNKFNGLIPAEFGSSSSLQLLNVSFNNISGSIPTGKTFKLMEKSAFIGNSELCGAPLRSCPDSVGILGRKGPWKITHIVLLSVGLLIVLLGLTFGILYLRRGIKSQWKMVSFVGLPQFTANDVLTSLTATKPTEVTSPSPAVTKAVLPTGITVLVKKMEWEARSIKVVSEFITRLGNSRHKNLIRLLGFCHNQHLVYLLYDYLPNGNLAEKMEIKWDWAAKFRTVVGIARGLCFLHHECYPAIPHGDLKPTNVVFDENMEPHLAEFGFKQVLRLSKGSSPTTTKWEAEYDAATKEELRMDIYNFGEMILEILSGGRLRNAGGSIHSKPWEDLLREIYNENEAKSASSLEEIKLVLEVAMFCTRSRSSDQPSMEDVLKHLSGLKHIDEGQ* 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0391 990 Gene3D Ribonuclease Inhibitor 63 223 IPR032675 -
Vra5g0391 990 ProSitePatterns Serine/Threonine protein kinases active-site signature. 844 856 IPR008271 GO:0004672|GO:0006468
Vra5g0391 990 SUPERFAMILY RNI-like 322 635 - -
Vra5g0391 990 PANTHER UNNAMED PRODUCT 43 985 - -
Vra5g0391 990 SMART LRR_typ_2 377 401 IPR003591 -
Vra5g0391 990 SMART LRR_typ_2 233 257 IPR003591 -
Vra5g0391 990 SMART LRR_typ_2 137 161 IPR003591 -
Vra5g0391 990 SMART LRR_typ_2 592 615 IPR003591 -
Vra5g0391 990 SMART LRR_typ_2 305 329 IPR003591 -
Vra5g0391 990 SMART LRR_typ_2 353 376 IPR003591 -
Vra5g0391 990 Pfam Leucine rich repeat N-terminal domain 67 109 IPR013210 -
Vra5g0391 990 SUPERFAMILY Protein kinase-like (PK-like) 743 984 IPR011009 -
Vra5g0391 990 Gene3D Transferase(Phosphotransferase) domain 1 802 989 - -
Vra5g0391 990 SMART serkin_6 743 978 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0391 990 ProSiteProfiles Protein kinase domain profile. 708 982 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0391 990 Gene3D Ribonuclease Inhibitor 321 426 IPR032675 -
Vra5g0391 990 Gene3D Ribonuclease Inhibitor 224 320 IPR032675 -
Vra5g0391 990 Gene3D Ribonuclease Inhibitor 427 665 IPR032675 -
Vra5g0391 990 Gene3D Phosphorylase Kinase; domain 1 739 801 - -
Vra5g0391 990 Pfam Protein tyrosine and serine/threonine kinase 750 980 IPR001245 GO:0004672|GO:0006468
Vra5g0391 990 SUPERFAMILY L domain-like 98 423 - -
Vra5g0391 990 Pfam Leucine rich repeat 138 197 IPR001611 GO:0005515
Vra5g0391 990 Pfam Leucine rich repeat 331 390 IPR001611 GO:0005515
Vra5g0391 990 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE 43 985 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0391 Vra-Chr5 4072866 4076603 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0391 46 981 Receptor kinase-like Gene Family AT5G51350 53.749 0.0 956
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vra5g0391 PK_Tyr_Ser-Thr 3.3e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0391 - - aprc:113852384 1611.66