Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0387 ATGGCCTCTGACATCTCGTTTGAGGATCTCAAGAACAATGTTGATCTTGAAAAGATTCCAGTTGAAGAGGTCTTTGTGCAGCTTAAATGTACCAGACAGGGTCTAACATCTGCAGAAGGACAGAAGAGGCTCCAGATTTTTGGTTACAATAAATTAGAAGAGAAAAAAGAGTGCAAGGTCCTTAAGTTTTTGGGTTTTATGTGGAATCCTCTATCATGGGTCATGGAGTGTGCAGCTATCATGGCCATTGTATTGGCCAATGGAGGGGGCAAGCCACCGGATTGGCAAGATTTCACTGGTATTGTAGTGTTGCTTATCGTCAACTCAACCATCAGTTTCATTGAGGAAAACAATGCAGGCAATGCAGCAGCTGCTTTGATGGCTGGTCTTGCACCCAAAACCAAGGTGTTGAGGGATGGAAAATGGGGTGAAGAAGATGCATCAATTTTGGTACCTGGAGATTTGATTAGCATCAAGTTGGGTGATATCGTCCCTGCCGATGCCCGTCTCTTGGAGGGAGATCCTCTCAAAATTGACCAAGCTGCTCTCACTGGTGAATCCTTGCCAGTCACAAGGAACCCTGGTGATGAAGTCTTCTCTGGTTCCACCTGCAAACAAGGCGAAATTGAAGCTGTTGTCATTGCCACCGGTGTCAACACTTTCTTTGGCAAGGCTGCTCATCTTGTGGACAGCACCAACAATGTCGGTCACTTTCAACAGGTGTTGACATCTATTGGCAACTTTTGTATCTGCTCAATTGCTGTGGGGATGGTGATAGAGATCATTGTCATGTACCCCATCCAGCATAGGTCTTATAGAGATGGCATTGATAACTTATTGGTGCTTCTCATTGGTGGTATTCCAATTGCCATGCCTACTGTCTTGTCTGTGACCATGGCAATTGGGTCTCACCGTTTGTCCGAACAAGGAGCCATCACCAAGAGAATGACAGCCATTGAAGAAATGGCAGGGATGGATGTTCTTTGCAGTGACAAAACTGGAACTCTCACCCTTAATAAGCTTACTGTGGATAAGAACTTGATTGAGGTCTTTCCCAGGGGCATGGACAAGGACACCCTTGTCCTATATGCAGCTAGAGCTTCAAGGACTGAAAACCAGGATGCCATTGATTCATCAATTGTGGGAATGTTAAGTGACCCCAAGGAGGCAAGAGCAGGAATCACCGAGGTGCATTTCTTGCCTTTTAATCCTGTGGACAAGCGCACTGCTATTACCTTCATTGACAGCAATGGTGACTGGCACAGAAGCAGCAAAGGTGCTCCTGAGCAAATCATTGAACTCTGTGGCCTTAAAGGAGAGGTCTTGAAAAGGACACACAAGGTTATTGATGAATATGCTGACCGCGGTCTGCGTTCCTTAGGTGTTGCTCGCCAGAGTGTTCCAGAAAAGACGAAGGAGAGTGCTGGAGATCCATGGGAGTTTTTGGGTCTGCTACCTCTCTTTGATCCTCCAAGGCATGATAGTGCCGAGACCATTCGTCGTGCTATTGAACTTGGAGTCAATGTTAAAATGATCACCGGTGACCAACTTGCCATTGGCAAAGAAACCGGTCGCAGACTTGGAATGGGCACCAACATGTACCCTTCATCCTCCCTCCTTGGTGATTCCTCGGACGCAGCCCTCTCTTCAATCACAGTTGATGAACTCATTGAGAAGGCTGATGGATTTGCCGGAGTCTTCCCTGAGCACAAGTACGAGATTGTAAAGAGGTTGCAGGACAGAAAGCACATTTGTGGCATGACAGGAGATGGTGTGAACGACGCACCAGCACTGAAGAAGGCAGACATCGGCATTGCGGTGGATGATGCAACAGACGCAGCAAGGAGTGCCTCTGATATTGTTCTGACCCAACCTGGACTCAGTGTGATCGTGAGCGCTGTGCTGACAAGCAGGGCCATTTTCCAGAGGATGAAGAACTACACAATCTACGCTGTTTCCATCACAATCCGCGTTGTGTTTGGGTTCTTGCTCGTTGCCTTAATATGGAAGTTCGACTTCTCTCCCTTCATGGTTCTCATCATAGCCATCTTGAACGACGGAACCATCATGACCATATCAAAAGACAGGGTGAAACCATCTCCTTTGCCTGATTCATGGAAACTTAACGAAATCTTTGCAACAGGAATCGTTCTTGGAGCATACATGGCCATCATGACGGCAGTCTTCTTCTACCTCGTTCATGACACTCATTTCTTCTCTGTAAGCAACAGCCCCAGTTTCAATTACATATTACATATTATAAATATAACAAATGTCCATAAACATAATCATCTGATGAAAGTGTGTTTACTCTTATTTCAGGATGTCTTTAAAATACGTTCAATTGCAGAAAGCGAGGAACAGCTTAACTCTGCTCTGTACCTTCAAGTGAGTATCGTTAGTCAGGCACTGATCTTTGTCACGAGATCAAGGGGCTGGTCATATCTGGAACGCCCTGGCGTGATGCTCATCGTTGCCTTCATTTGTGCCCAACTGGTGGCCTCTGTGATTGCTGTGTATGCACATTGGGACTTTGCGAAAATCCATGGAGTTGGGTGGGAATGGGTTGGAGCAATCTGGGTCTACAGTATCATCACCTACATTCCTCTTGATATCCTCAAATTTCTCATCCGCATGGGGCTAACAAACTGTGCTTGCGACACCACGCACCCAAACAAGCCTTAG 2685 0.4629 MASDISFEDLKNNVDLEKIPVEEVFVQLKCTRQGLTSAEGQKRLQIFGYNKLEEKKECKVLKFLGFMWNPLSWVMECAAIMAIVLANGGGKPPDWQDFTGIVVLLIVNSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWGEEDASILVPGDLISIKLGDIVPADARLLEGDPLKIDQAALTGESLPVTRNPGDEVFSGSTCKQGEIEAVVIATGVNTFFGKAAHLVDSTNNVGHFQQVLTSIGNFCICSIAVGMVIEIIVMYPIQHRSYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSEQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEVFPRGMDKDTLVLYAARASRTENQDAIDSSIVGMLSDPKEARAGITEVHFLPFNPVDKRTAITFIDSNGDWHRSSKGAPEQIIELCGLKGEVLKRTHKVIDEYADRGLRSLGVARQSVPEKTKESAGDPWEFLGLLPLFDPPRHDSAETIRRAIELGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGDSSDAALSSITVDELIEKADGFAGVFPEHKYEIVKRLQDRKHICGMTGDGVNDAPALKKADIGIAVDDATDAARSASDIVLTQPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRVVFGFLLVALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLNEIFATGIVLGAYMAIMTAVFFYLVHDTHFFSVSNSPSFNYILHIINITNVHKHNHLMKVCLLLFQDVFKIRSIAESEEQLNSALYLQVSIVSQALIFVTRSRGWSYLERPGVMLIVAFICAQLVASVIAVYAHWDFAKIHGVGWEWVGAIWVYSIITYIPLDILKFLIRMGLTNCACDTTHPNKP* 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0387 894 SUPERFAMILY Calcium ATPase, transduction domain A 132 229 IPR008250 -
Vra5g0387 894 CDD P-type_ATPase_H 34 875 IPR006534 GO:0008553|GO:0016021|GO:0120029
Vra5g0387 894 Pfam haloacid dehalogenase-like hydrolase 325 602 - -
Vra5g0387 894 Gene3D - 341 488 IPR023299 GO:0000166
Vra5g0387 894 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 34 840 IPR006534 GO:0008553|GO:0016021|GO:0120029
Vra5g0387 894 SUPERFAMILY HAD-like 325 635 IPR036412 -
Vra5g0387 894 ProSitePatterns E1-E2 ATPases phosphorylation site. 331 337 IPR018303 -
Vra5g0387 894 PANTHER CALCIUM-TRANSPORTING ATPASE 772 893 - -
Vra5g0387 894 PANTHER CALCIUM-TRANSPORTING ATPASE 5 740 - -
Vra5g0387 894 Gene3D - 132 216 - -
Vra5g0387 894 SMART Cation_ATPase_N_a_2 15 87 IPR004014 -
Vra5g0387 894 SFLD C1.7: P-type atpase like 311 640 - -
Vra5g0387 894 SUPERFAMILY Calcium ATPase, transmembrane domain M 14 879 IPR023298 -
Vra5g0387 894 Pfam E1-E2 ATPase 131 308 - -
Vra5g0387 894 Pfam Cation transporter/ATPase, N-terminus 18 81 IPR004014 -
Vra5g0387 894 PANTHER PLASMA MEMBRANE ATPASE 5 740 - -
Vra5g0387 894 PANTHER PLASMA MEMBRANE ATPASE 772 893 - -
Vra5g0387 894 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 562 674 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra5g0387 894 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 101 347 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra5g0387 894 PRINTS P-type cation-transporting ATPase superfamily signature 179 193 - -
Vra5g0387 894 PRINTS P-type cation-transporting ATPase superfamily signature 329 343 - -
Vra5g0387 894 PRINTS P-type cation-transporting ATPase superfamily signature 483 494 - -
Vra5g0387 894 PRINTS P-type cation-transporting ATPase superfamily signature 505 515 - -
Vra5g0387 894 PRINTS P-type cation-transporting ATPase superfamily signature 588 607 - -
Vra5g0387 894 PRINTS P-type cation-transporting ATPase superfamily signature 611 623 - -
Vra5g0387 894 Gene3D - 326 625 IPR023214 -
Vra5g0387 894 PRINTS H+-transporting ATPase (proton pump) signature 445 463 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra5g0387 894 PRINTS H+-transporting ATPase (proton pump) signature 560 576 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra5g0387 894 PRINTS H+-transporting ATPase (proton pump) signature 588 604 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra5g0387 894 PRINTS H+-transporting ATPase (proton pump) signature 619 644 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra5g0387 894 PRINTS H+-transporting ATPase (proton pump) signature 794 815 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra5g0387 894 SFLD p-type atpase 311 640 IPR044492 -
Vra5g0387 894 Gene3D - 94 741 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0387 Vra-Chr5 3992794 3996773 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0387 1 887 Primary Pumps ATPases AT3G42640 80.405 0.0 1444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0387 K01535 - gmx:100798717 1465.29