Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0382 ATGCAGCAGGGTGATCCAACGGTTCTAAGCTTGAGGCCTGGCGGTGGTCGTGGCGGTGGAAGCAGGCTTTTCGCTCTCTCCTCCTCATCGTCTTCCCCTTTCACTCCTTCCGTCGATCTTTCTCTCTCGCGCCCCCATGCGTTTTTCTCTCTCAAGACTGGAGATTCACGTTTTGAGGTTCGTGAGCGTGTGCAATATACCNGAGATCAGCTTTTAGAGCTTGGCAAGGCTGTTGAAGTCCTTGATGATATTCTGAAAATTAAGGAAGATATAGGAGCTGAACTTTTCGGTGAAAATCAAAGTTGGGGCGGCCGAGCTGACAGCAATCTTCCTCATCAACTACCAAACCGGTATTCCGAGTTAGACAATCGTGATTGGCGAGGTCGTTCTGGACAACTTCCTGCTAGTCAAGATGAGAAGTCTTGGGAAAACCTCAGAGATAACAGTAGTCAGATTAATCGCCAAGACCATCTTAATTCCCAGTTTGCAAGGACACAGATATCTTCTACCCAAGGGGGAGGACCTACTCCTACACTAGCCAAGGCCGAGGTTCCTTGGTCAGCCAGAAGGGGAAGTCTATCTGATAAGGATCGTGTCTTAAAAACTGTGAAAGGAATTCTGAATAAGTTAACTCCTGAGAAATTTGATGTCCTGAAGGGTCAATTAATTGATTCTGGCATTACCTCTGCTGACATCTTGAAGGATGTCATTTCACTTATTTTTGACAAGGCTGTTCTAGAACCAACATTTTGCCCAATGTATGCTCAGCTGTGTTCTGATCTGAATGAAAAACTGCCTCCGTTCCCATCTGGGGAACCTGGTGGGAAGGAAATCACCTTTAAGCGAGTATTATTGAATAATTGCCAGGAGGCATTTGAAGGTGTAGAACTAAAAAGGATGGCTGCCCCTGAGCAGGAGATGGACCGTACGGACAAGGAAAGACTGCTCAAGCTTCGGACTCTTGGAAATATCCGTTTAATTGGTGAGCTATTGAAGCAGAAGATGGTCCCTGAAAAGATTGTCCATCACATTGTTCAGGAGCTTTTAGGACCCCCAGACAGCAAGTCTTGTCCTGTCGAGGAAAATGTTGAAGCCATATGTCAGTTTTTCAACACTATTGGCAAGCAGCTTGATGAGGGTCCTAAATCGCGGCGTATAAATGATATTTACTTTAGTCGATTGAAAGAATTGAGCTCAAATCTACAACTTGTACCCCGGATAAGGTTCATGATTCGGGATGTTCTAGAGTTACGAGCTAATAACTGGGTGCCTAGACGGGAAGAGATCAAAGCCAAAACCATTACTGAAATTCATTCAGAAGCAGAAAAGAATCTTGGTTTGCGACCGGGTGCCACCGCGAGTATGAGAAACACCCGTGGTGGTGTTCAAGGAAATTTCAGCCCTGGGGGCTTCCCTATTTCCCGACCTGGTGCAGGGGGTTTGATGCCTGGAATGCCAGGGACCAGGAAGATGCCTGGGATGCCTGGATTTGATAATAACAACTGGGAGATGCCTAAGACTAGATCTATGCCAAGAGGAGACTTCTCAGGTGTTCAAGCTGCTGGATCCAACAGCCCTTTACTTTCCAAGTCCACAATCATTAATTCAAAATTGCTACCTCAAGGGAGTAGTGGTATAATAAGTGGAAGAAATAGTGCCTTAGTGCTTGGAGCTGCTACATCTTTTGCTCGTCCAGCAAACTTCAGTTTAGGCCATGAGACAGCACCTCAGCTCTCTTCACATGATAGAACTGTTGTTCCTGTTCCTGTATCCTCTGAGAAGCCACAAGCACCTGCCAGTGGATTGAATACTGATGATCTTCGCCGCAGAACTATCTCTCTTCTAGAAGAATATTTCAGTGTTCAAATTTTGGAAGAGGCATTACAGTGTGTGGAGGAATTGAAATCTCCTTCTTATCATCCTGAGGTTGTTAAGGAAGCCATTTATCTTGCACTTGATAAAAGTCCACCATGTGTTGAACCTGTAGCCAATCTCATGGAGTATCTATACATTAAGAAGATTCTTACTGTTATAGATATTGAGGCAGGCTGTTTGTTATTCGGTTCTGTGCTGGATGATATAGGCATAGATTTACCTAAAGCACCTAGTAATTTTGGTGTGATAATTGGGAAACTAATTTTGGTCGGGGGATTAGATTTTAAGGTGGCGAGAGAGATTCTCAAGAAGGTGGAAGATGACATGTTCAAGAGAGCAATATTTGACAGTGCGGTAGGGACTATTAAATCTGCTGCATCCGGGCAATCAGTGTTGGATTTACAAACATCTGATATTGAGGCCTGTCAGAGTCTGCTCAAATCAAGATATATTGGTGCTTGGAGGATCTTACTTGTCGGACTTTAA 2361 0.4452 MQQGDPTVLSLRPGGGRGGGSRLFALSSSSSSPFTPSVDLSLSRPHAFFSLKTGDSRFEVRERVQYTXDQLLELGKAVEVLDDILKIKEDIGAELFGENQSWGGRADSNLPHQLPNRYSELDNRDWRGRSGQLPASQDEKSWENLRDNSSQINRQDHLNSQFARTQISSTQGGGPTPTLAKAEVPWSARRGSLSDKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITSADILKDVISLIFDKAVLEPTFCPMYAQLCSDLNEKLPPFPSGEPGGKEITFKRVLLNNCQEAFEGVELKRMAAPEQEMDRTDKERLLKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGPPDSKSCPVEENVEAICQFFNTIGKQLDEGPKSRRINDIYFSRLKELSSNLQLVPRIRFMIRDVLELRANNWVPRREEIKAKTITEIHSEAEKNLGLRPGATASMRNTRGGVQGNFSPGGFPISRPGAGGLMPGMPGTRKMPGMPGFDNNNWEMPKTRSMPRGDFSGVQAAGSNSPLLSKSTIINSKLLPQGSSGIISGRNSALVLGAATSFARPANFSLGHETAPQLSSHDRTVVPVPVSSEKPQAPASGLNTDDLRRRTISLLEEYFSVQILEEALQCVEELKSPSYHPEVVKEAIYLALDKSPPCVEPVANLMEYLYIKKILTVIDIEAGCLLFGSVLDDIGIDLPKAPSNFGVIIGKLILVGGLDFKVAREILKKVEDDMFKRAIFDSAVGTIKSAASGQSVLDLQTSDIEACQSLLKSRYIGAWRILLVGL* 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0382 786 SMART if4_15 200 421 IPR003890 GO:0003723|GO:0005515
Vra5g0382 786 MobiDBLite consensus disorder prediction 146 161 - -
Vra5g0382 786 Pfam MIF4G domain 200 421 IPR003890 GO:0003723|GO:0005515
Vra5g0382 786 SMART ma3_7 607 719 IPR003891 -
Vra5g0382 786 PANTHER MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN ISOFORM 2 3 771 - -
Vra5g0382 786 SUPERFAMILY ARM repeat 194 424 IPR016024 -
Vra5g0382 786 Gene3D - 600 775 - -
Vra5g0382 786 MobiDBLite consensus disorder prediction 100 161 - -
Vra5g0382 786 ProSiteProfiles MI domain profile. 606 728 IPR003891 -
Vra5g0382 786 Pfam MA3 domain 607 718 IPR003891 -
Vra5g0382 786 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 3 771 IPR045208 GO:0003743
Vra5g0382 786 MobiDBLite consensus disorder prediction 1 26 - -
Vra5g0382 786 Gene3D - 192 422 - -
Vra5g0382 786 MobiDBLite consensus disorder prediction 450 522 - -
Vra5g0382 786 MobiDBLite consensus disorder prediction 102 116 - -
Vra5g0382 786 SUPERFAMILY ARM repeat 601 758 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0382 Vra-Chr5 3949492 3955914 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0382 1 770 Eukaryotic Initiation Factors Gene Family AT5G57870 62.374 0.0 920
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0382 K03260 - gmx:100800438 1206.82