Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0378 ATGCAGCCCTGTAGCAGAGAAATGCAAGGGATAAACTCCCTCTTCAACTCTTCTTCCCAAATCTCCCTCCAGGACCTCCACACCACCACCGCCGCCACCGCCGCCGCCGCCACCAACCAGATCCAAAATTCACACATCAACCACCACCACCAACAACCACTCCAACTCCCTCACTTCGACCCGACCTCTCAGGATGACTTTCTCGACCAAATGTTCTCCTCCTGCTCCTGGCCCGACCTCAACCCAAACAAGTCCTTGTGGGACCCCAATACCCTCTCCGACCAAACCACTCCCTCCGACAACGACAATACCAATAATACTAACAATAATAATGTCGCTTTCCCCTACGACGAACCCTCCACCTTGGCCTCCAAGTTCCGCAACCACCAGATCAGCGCCTCCTCTACAAAAAACGCCGCCGCAGCTCTCATGCTCCAGCACCAACTCCTCATGTCCAGAGACTCTCCTCTCCTTCACATGCCGCTTTCCTTACCTCAAAACGACGTCGTTGACGCCTCCTCCTTCAAATCCCCCAATCCCGGCGGCGAGACTTCGGTCCAGGCTCTCTACAACGGCTTTGCCGGATCTCTGCATGGCGCCGGTCAAGCCTCCAACCAGACTCAGCATTTTCAACATCCTCAGGGAAGTTCTAATCCGATGCAAGGGCAAAATTTTGGTGCGCCGGGTACTGGGGCCGCAACGAACCAAGCTCCGGCGAGTGGCGCGGCGGCTCAGCCGAGGCAGAGGGTTCGTGCAAGGAGAGGTCAAGCCACGGACCCACACAGCATCGCTGAAAGGTTAAGAAGGGAGAGAATCGCAGAGAGAATGAAAGCCCTACAGGAACTGGTTCCCAATGCTAACAAGACAGACAAGGCATCGATGCTAGATGAGATCATCGATTACGTGAAGTTCCTGCAGCTCCAAGTCAAGGTTCTGAGCATGAGCAGATTGGGCGGTGCAGCTGCTGTCGCACCCCTTGTTGCTGATATGTCTTCTGAGGGTGGCGGTGACTGCATCCAAGCCAACGGCAACGGTAACCGCGGCGGTTCCCTCGCCCCGAATTCCAGCAGCAACAACAACCAAACGACAGCGTCAACCTCGAACGACAGCCTAACCATGACGGAGCACCAGGTAGCGAAACTGATGGAGGAGGACATGGGTTCCGCCATGCAGTACCTTCAAGGCAAGGGCCTTTGCCTCATGCCCATTTCTCTTGCCACTGCCATCTCCACTGCCACGTGTCACACCAGGAACCCCTTGATCAATGCCGCCTCCGGTAGCACCCATATTCCGACCAACGCCGCTCCCAACGCACTCGTCAACCCCGCCCTGGCGTCCAACGGCGAAGGCCCGTCCTCCCCGAGCATGTCCGTGCTGACGGTGCAGTCGGCAGTGGTGGGCAACGAGGGCGCCGTGAAGGAGGCTGCCTCCGTTTCGAAGCCGTGA 1446 0.5726 MQPCSREMQGINSLFNSSSQISLQDLHTTTAATAAAATNQIQNSHINHHHQQPLQLPHFDPTSQDDFLDQMFSSCSWPDLNPNKSLWDPNTLSDQTTPSDNDNTNNTNNNNVAFPYDEPSTLASKFRNHQISASSTKNAAAALMLQHQLLMSRDSPLLHMPLSLPQNDVVDASSFKSPNPGGETSVQALYNGFAGSLHGAGQASNQTQHFQHPQGSSNPMQGQNFGAPGTGAATNQAPASGAAAQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGDCIQANGNGNRGGSLAPNSSSNNNQTTASTSNDSLTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHTRNPLINAASGSTHIPTNAAPNALVNPALASNGEGPSSPSMSVLTVQSAVVGNEGAVKEAASVSKP* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0378 481 Gene3D - 251 313 IPR036638 GO:0046983
Vra5g0378 481 MobiDBLite consensus disorder prediction 197 261 - -
Vra5g0378 481 MobiDBLite consensus disorder prediction 338 372 - -
Vra5g0378 481 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 256 305 IPR011598 GO:0046983
Vra5g0378 481 Pfam Helix-loop-helix DNA-binding domain 261 306 IPR011598 GO:0046983
Vra5g0378 481 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 56 426 - -
Vra5g0378 481 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 254 316 IPR036638 GO:0046983
Vra5g0378 481 MobiDBLite consensus disorder prediction 86 111 - -
Vra5g0378 481 PANTHER TRANSCRIPTION FACTOR BHLH69 56 426 - -
Vra5g0378 481 SMART finulus 262 311 IPR011598 GO:0046983
Vra5g0378 481 MobiDBLite consensus disorder prediction 198 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0378 Vra-Chr5 3899810 3903562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0378 245 480 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 61.265 3.60e-90 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra5g0378 HLH 1.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0378 - - gmx:100807286 618.231