Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0377 ATGGCTGACAAAACCAACAGCAACAGCGCCGAGGCTAATAACTCCATGTTGCTCCACGGCAAGTACGAGCTAGGGCGGCTACTGGGGCACGGAACGTTCGCCAAGGTGTACCACGCGCGGAACCTCAAGAGCGGAAAGAGCGTGGCCATGAAGGTGGTGGGGAAGGAGAAATTGATCAAGGTGGGGATGATGGAGCAGATCAAAAGGGAGATCTCCGCCATGAACATGGTCAAGCACCCCAGCATCGTTCAGCTCCACGAGGTCATGGCCAGCAAGTCCAAGATCTACATCGCCATGGAGCTCGTGCGAGGCGGCGAGCTCTTTAACAAGATCGCCCGCGGTCGTCTCAGGGAGGACACTGCGCGCCTCTACTTCCAGCAGCTCGTCTCCGCCGTCGACTTCTGCCACAGCCGTGGCGTCTACCACCGCGACCTCAAGCCGGAGAACCTCCTTCTCGACGAGGAGGGTAACCTCAAAGTCACCGACTTCGGCCTCAGCACCTTCTCCGAGCACCTCCGCCAGGACGGCCTGCTTCACACCACGTGCGGCACCCCGGCCTACGTGGCGCCGGAGGTCATCGGGAAAAAAGGCTACGACGGCGCCAAGGCTGATATCTGGTCTTGCGGTGTAATCCTCTATGTACTCCTCGCAGGGTTTTTACCCTTCCAGGATGACAACTTGGTCTCCTTGTATAAGAAAATTTACCGCGGTGACTTCAAGTGCCCGCCGTGGTTTTCATCCGAGGCACGCCGCCTCATTACGAAGCTCCTCGACCCGAACCCGAATAACCGAATAACGATTTCCAAGATCATGGAGTCGTCCTGGTTTAAAAAATCGGTTCCGAAGGACGTGATGGGAGCGAAGAGAGAAGAGTTGGATTTGGAGGAAAAGATTAAGCAGTTGGAAGAATCTAAGTCCACCACGATGAATGCTTTTCATTTAATTTCGCTTTCGGAGGGGTTCGATTTGTCGCCCTTGTTTGAGGAGAAGAAGAGGGAGGAGAAGGAGATTCGGTTTGCGACCACACGCCCTGCGAGTAGCGTGATTTCACGGCTGGAGGAGGTGGCGAAGGCGGTGAAGTTTGACGTTAAGAAAAGCGAGAGCAAAGTGAGGTTGCAGGGTCAACAGCGGGGTCGGAAAGGGAAGCTTGCAATTGCTGCGGATTTATACGCCGTGACGCCGTCGCTTTTGGTGGTGGAGGTGAAGAAGGACAACGGTGATACCTTGGAGTACAACCAGTTCTGCAGCAACCAACTTCGTCCTGCGCTTAAAGACATCGTGTGGAGGACTTCCCCTTCTGAGAATCCTACACCTGCTTGA 1320 0.5508 MADKTNSNSAEANNSMLLHGKYELGRLLGHGTFAKVYHARNLKSGKSVAMKVVGKEKLIKVGMMEQIKREISAMNMVKHPSIVQLHEVMASKSKIYIAMELVRGGELFNKIARGRLREDTARLYFQQLVSAVDFCHSRGVYHRDLKPENLLLDEEGNLKVTDFGLSTFSEHLRQDGLLHTTCGTPAYVAPEVIGKKGYDGAKADIWSCGVILYVLLAGFLPFQDDNLVSLYKKIYRGDFKCPPWFSSEARRLITKLLDPNPNNRITISKIMESSWFKKSVPKDVMGAKREELDLEEKIKQLEESKSTTMNAFHLISLSEGFDLSPLFEEKKREEKEIRFATTRPASSVISRLEEVAKAVKFDVKKSESKVRLQGQQRGRKGKLAIAADLYAVTPSLLVVEVKKDNGDTLEYNQFCSNQLRPALKDIVWRTSPSENPTPA* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0377 439 SUPERFAMILY Protein kinase-like (PK-like) 19 284 IPR011009 -
Vra5g0377 439 CDD CIPK_C 310 424 - -
Vra5g0377 439 Gene3D Phosphorylase Kinase; domain 1 19 103 - -
Vra5g0377 439 ProSiteProfiles NAF domain profile. 304 328 IPR018451 GO:0007165
Vra5g0377 439 Coils Coil 284 307 - -
Vra5g0377 439 ProSiteProfiles Protein kinase domain profile. 22 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0377 439 Pfam Protein kinase domain 22 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0377 439 SMART serkin_6 22 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0377 439 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 14 434 - -
Vra5g0377 439 CDD STKc_SnRK3 21 275 - -
Vra5g0377 439 ProSitePatterns Protein kinases ATP-binding region signature. 28 55 IPR017441 GO:0005524
Vra5g0377 439 Pfam NAF domain 307 365 IPR004041 GO:0007165
Vra5g0377 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Vra5g0377 439 PANTHER - 14 434 - -
Vra5g0377 439 Gene3D Transferase(Phosphotransferase) domain 1 104 282 - -
Vra5g0377 439 Gene3D Kinase associated domain 1, KA1 303 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0377 Vra-Chr5 3886295 3888421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0377 2 433 CBL-interacting serine-threonine protein kinases AT4G30960 71.882 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vra5g0377 Pkinase 1.6e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0377 - K07198 gmx:100806762 790.03