LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra5g0375	ATGAATTCTGATTTTATGTTGGAATTTTCTTCCTTTTTAAATGAAGTCGGTGAGGATGATTACACAGATAATTTTTCCACTGATCAAATATTCTCATCACGTGTCGATTTGATTGATTGGGTTCGAAAGATTGCATTTGAGCTTGGATTTATGGTCGTCTACATAAGATCTGACACAACAACTGGTGAAGCTGGAAGAAAGACATTCGTTGTGTTAGGCTGTGAAAGGAGTAGGAAATATAGGAAGTATAAGCAAGATGTGCAACCTAGTGTGTCTGACACAAGAAAATGTGAGTGCCCGTTTAAGTTGAGGGGTAAACCTAAAGGAGACGGTTGGGTGCTAAAGGTTATGACCGATTATCACAACCATGAATTAGTAGAGACTTTGGTTGGTCATCCTTTCACGGGGAGGTTAAATGCTATTGAACAGTCTATTCTTGTTGACATGACTAGGAGTCAAGTTAAGCCCTCCAATATTCTTTTGACTCTTAAAGAATGTAATGAGGATAACATGATGACTATAAAACAAATATATAACGCGAGATACACTTGCAAACGATTTTTGAGAGGGTCGAGAACTGAAATGCTGCAATTGATGCTGTTGTTAGATAAAGACAAATACATCCAGAGAAGTAGATGTTTTGAAGATTCTGACATAGTAAGTGACCTATTCTGGACACATCCTGATTTAGCGCACCTGAATGTGAAAGNGAAATGCAAGATGTTAGTGGATAATGTTGAGGCATGGGATGGGTTGATGAAAGTGCGGCAAAATGTGATGGATTGTGTCGACCAATCCATGTTTGGTGCTTATGTTTATCGTTTTGAGTATGCCTCTGCTTCATGGCCTTTATTTTTTGATAATGTGAATCGTACCTGGATCATTCCGATTGAGTCTGCGCACTGGAGCCTGAAGAGATTATTGGGGTCTAGTATGGGAGACCTATGCTCGTGCTGGGATGTTATGCATAACGTCATTGTCCTACAACATAATAAGATCAGAGCGTCCTTTGAAAAAAGTCTTAACGTAATGAGTGATGGTTATAAAGGACTGAGATATAGAAGACTTGTTGGACGTGTTTCACGATACGTTCTAGGACTTATTACTGATGAAGTTGAGCGAGTGAATAAAATGGGTTTGGATAGTGCTCGTTGTGGATGCATTTTGAGCTCAACCATTTCAAGTACCGTGTCTACTGAATCGCTTCTAGAGTTTAGCCTTGATCTTGAAGTTCAACTGATGACATCTATGGTTGCTCCGTCGCATAAAGTAAAGACAAAAGGTGCACAGAAGACTAAAGTTGCACGACATGAGAGGCCTACGAAACGTGACCCATCATATTTTGAGCACGTTGACACTTTTCATTCCAGGACAGAGCCTTCTTCTTCACAAAAATCACAAGTCAAATCGAAGCTGAAAGAATTTTCGCAAAGGCTAATGCCGATGTTTCATCCGATTTGTCATCCATGCATTGTCGATATTGTTGATGTTGTTGCTGATGGTCATTACGGTTATCGATGCATTACTGCTTTGTTTGGTCCAGGTGAAGAGGCATGGCCCATTATCCGGCATGACCATTATGAAGAACTAACTTAG	1596	0.3991	MNSDFMLEFSSFLNEVGEDDYTDNFSTDQIFSSRVDLIDWVRKIAFELGFMVVYIRSDTTTGEAGRKTFVVLGCERSRKYRKYKQDVQPSVSDTRKCECPFKLRGKPKGDGWVLKVMTDYHNHELVETLVGHPFTGRLNAIEQSILVDMTRSQVKPSNILLTLKECNEDNMMTIKQIYNARYTCKRFLRGSRTEMLQLMLLLDKDKYIQRSRCFEDSDIVSDLFWTHPDLAHLNVKXKCKMLVDNVEAWDGLMKVRQNVMDCVDQSMFGAYVYRFEYASASWPLFFDNVNRTWIIPIESAHWSLKRLLGSSMGDLCSCWDVMHNVIVLQHNKIRASFEKSLNVMSDGYKGLRYRRLVGRVSRYVLGLITDEVERVNKMGLDSARCGCILSSTISSTVSTESLLEFSLDLEVQLMTSMVAPSHKVKTKGAQKTKVARHERPTKRDPSYFEHVDTFHSRTEPSSSQKSQVKSKLKEFSQRLMPMFHPICHPCIVDIVDVVADGHYGYRCITALFGPGEEAWPIIRHDHYEELT*	532

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra5g0375	531	MobiDBLite	consensus disorder prediction	431	447	-	-
	Vra5g0375	531	PANTHER	MALONATE-SEMIALDEHYDE DEHYDROGENASE	31	181	IPR010061	GO:0004491
	Vra5g0375	531	PANTHER	METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE [ACYLATING], MITOCHONDRIAL-LIKE ISOFORM X1	31	181	-	-
	Vra5g0375	531	MobiDBLite	consensus disorder prediction	425	447	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra5g0375	Vra-Chr5	3865796	3868012	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Vra5g0375		None	None	None

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra5g0375	-		-	vra:106760081	1053.51