Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0374 ATGTTGATAACTGTTAGGGAAGCTTCTTGTTCTTCTCCCCTCAATTTCTGGCTTAATCGTTTCAAACCAAAACCCTCTAAACCATTCAGAACATCCATTTGCCAGGCCAGTTTCTCTGTCCAAAGAACACCCACCCATTCATGGAAAACTCGGCATCTCTCAACCAGTGATGGAGCTCACTTTGATCCCTTGGGTATCAACTCAGATTTACCTTCTGCCTTGAATTCTACTTGGGAAAATCTGTTGTGCTTGTTTACACAACCATTTGAGAGTTCTTCTAGTACAGAAAAGGGAAAACCTAACAACTCACAAGGGGTGGCAGCTGCAATAGAGAATAGTTCAATAGATTTTGGTGACTTTTTTAAAGGTCCACTTCCAGGGAAGTTTCTCAAACTTTTAGGGTTTCTTGCCTTGTCACGGCTCGGAGTTTACATACCCCTAGGTGGAGTTAATAGGGATGCTTTTGTTGGAAATTTAGATCAGAACAGTTTGTTAAGCACTTTGGACTCGTTTTCTGGTGGTGGTATTGGTAGACTCGGGGTATGCTCCCTTGGTATTGTTCCCTTCATCAATGCACAGATTGTTTTCCAGCTTCTTGCACAAATATATCCCAAATTGCAAGATCTTCAAAAGAGAGAAGGTGAGGCTGGAAGAAAGAAAATTCTGCAGTACACTCGATATGCTTCTGTCGGATTTGCCATTGTGCAGGCAATCGGCCAAGTTCTTTACCTACGTCCCTATGTCAATGACTTTTCTGTAGAGTGGGTTCTTTCTTCTGTAATCTTATTGACTCTTGGCTCTGTGTTTACAACATATATTGGGGAACGAATTACAGACCTAAAACTTGGGAATGGCACCTCTCTTTTGATATTCACGAACATTATATCCTACTTGCCAGCTTCTTTTGGTAGGACAATTGCACAAGCATTTAATGATGCTAACTACGTTGGACTTGCTACCATTATTGTGTCCTTCGTCTTTTTGGTGGTTGGTATCGTTTATGTTCAGGAAGCAGAGAGAAAAATCCCTATCAACTATGCTTCTAGATATACCAGCAAAAGCACTGGACTTGAAAAGTCCGCTTACCTACCCTTTAAGGTAAATAGCTCTGGAGTAATGCCTATAATCTTTTCTACGTCGTCATTAGCTCTTCCTGGTACTTTAGCACGCTTCACTGGTTTAACTGCTTTAAAGAAGGCTGCGGTGGCATTAAATCCAGGAGGTTCTTTCTACCTTCCATTCAACATACTCTTGATAGCCTTCTTCAACTATTATTACACTTTCCTACAACTGGACCCTGATGATGTGAGTGAACAACTGAAACGACAAGGTGCTTCAATTCCACTCGTCAGACCAGGCAGAAGTACAGCTACATTTATCAAAACAGTTCTTAGTAGAATATCAGTTCTGGGTTCAACATTTTTGGCTATCTTGGCTGCTGGTCCAGCAGTTGTAGAACAGATCACTCACTTGACTGCATTTCGGGGATTTGCAGGAACTTCTGTTCTTATTCTTGTTGGTTGTGCAACAGACACGGCAAGAAAAGTTCAAGCTGAGATTATATCCCAAAAGTACAAGAACATAGAGTTCTATGATTTTGATAAATATTGA 1611 0.4097 MLITVREASCSSPLNFWLNRFKPKPSKPFRTSICQASFSVQRTPTHSWKTRHLSTSDGAHFDPLGINSDLPSALNSTWENLLCLFTQPFESSSSTEKGKPNNSQGVAAAIENSSIDFGDFFKGPLPGKFLKLLGFLALSRLGVYIPLGGVNRDAFVGNLDQNSLLSTLDSFSGGGIGRLGVCSLGIVPFINAQIVFQLLAQIYPKLQDLQKREGEAGRKKILQYTRYASVGFAIVQAIGQVLYLRPYVNDFSVEWVLSSVILLTLGSVFTTYIGERITDLKLGNGTSLLIFTNIISYLPASFGRTIAQAFNDANYVGLATIIVSFVFLVVGIVYVQEAERKIPINYASRYTSKSTGLEKSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGLTALKKAAVALNPGGSFYLPFNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGRSTATFIKTVLSRISVLGSTFLAILAAGPAVVEQITHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIEFYDFDKY* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0374 536 ProSitePatterns Protein secY signature 1. 180 199 IPR030659 -
Vra5g0374 536 Gene3D SecY subunit domain 120 525 IPR023201 -
Vra5g0374 536 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 47 534 IPR002208 GO:0015031|GO:0016020
Vra5g0374 536 Pfam SecY 181 512 IPR002208 GO:0015031|GO:0016020
Vra5g0374 536 PANTHER PREPROTEIN TRANSLOCASE SUBUNIT SCY1, CHLOROPLASTIC 47 534 - -
Vra5g0374 536 Hamap Protein translocase subunit SecY [secY]. 117 529 IPR026593 -
Vra5g0374 536 ProSitePatterns Protein secY signature 2. 272 289 IPR030659 -
Vra5g0374 536 PRINTS Preprotein translocase SecY subunit signature 129 147 - -
Vra5g0374 536 PRINTS Preprotein translocase SecY subunit signature 179 199 - -
Vra5g0374 536 PRINTS Preprotein translocase SecY subunit signature 221 244 - -
Vra5g0374 536 PRINTS Preprotein translocase SecY subunit signature 253 278 - -
Vra5g0374 536 PRINTS Preprotein translocase SecY subunit signature 279 302 - -
Vra5g0374 536 PRINTS Preprotein translocase SecY subunit signature 370 389 - -
Vra5g0374 536 PRINTS Preprotein translocase SecY subunit signature 409 431 - -
Vra5g0374 536 PRINTS Preprotein translocase SecY subunit signature 464 482 - -
Vra5g0374 536 PRINTS Preprotein translocase SecY subunit signature 498 516 - -
Vra5g0374 536 SUPERFAMILY Preprotein translocase SecY subunit 121 519 IPR023201 -
Vra5g0374 536 TIGRFAM 3a0501s007: preprotein translocase, SecY subunit 128 525 IPR002208 GO:0015031|GO:0016020
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0374 55 536 Chloroplast and Mitochondria Gene Families AT2G18710 84.440 0.0 830
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0374 K10956 - gmx:100810430 930.628