Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0372 ATGGGGAAGCATAATCAAAGACAGAAAACCAATGCAACCACTAACGACAACAACCTTAACACCACAAACACTGTCACCAACAAGGTCAAACGAACAAGAAGAAGTGTCCCCAGAGATTCCCCTCCTCAACGCAGCTCAATATACAGAGGAGTCACCAGGCACCGATGGACAGGCCGATATGAAGCTCATTTGTGGGACAAGAATTGCTGGAATGAGTCACAGAACAAGAAAGGACGACAAGTCTACCTCGGTGCTTATGACGATGAAGAGGCTGCAGCACACGCTTACGATCTAGCAGCATTGAAATACTGGGGTCAAGACACCATCCTCAATTTTCCATTATCTACTTACCAGAATGAACTGAAAGAAATGGAGGGTCAGTCTCGAGAAGAGTATATTGGATCATTACGAAGGAAAAGCAGCGGCTTTTCTCGTGGAGTTTCTAAATACAGAGGTGTTGCAAGACACCATCATAATGGAAGATGGGAGGCTCGGATTGGCAGGGTTTTCGGCAACAAATACCTTTACCTCGGAACTTACGCAACACAAGAAGAAGCTGCGACAGCATATGACATGGCAGCTATTGAATATCGAGGACTCAACGCTGTGACCAATTTCGACCTTAGCCGCTACATCAAGTGGCTTAAGCCAAACAATAACGACAACACTGCGAACTCTAATGTTCTTGACGCTAACCCTAATTCTGAGACCAACTTTACCCCAAATTCTAATCAAGAACAAGGATTCAATTTTTTCCAGAGTCAAGAATCGACGGTGACTCAGCCTCGATCTTCTGGCGCCACGTCAGCCCTAGGACTTTTGCTGCAGTCGTCCAAGTTCAAGGAGATGATGGAGATGACTTCCGCCGCCGATTTGTCGACGGCGGCGTCGGGGTCTGAGCTGGTGCCGTGCACGTTTCCCGATGACATTCAGACGTATTTCGAGTGTGAAGATTCCAACAGATATGGAGAAGGGGATGATAACATGTTCGGCGAGCTCAACGGGTTTGTGCCCCATATGTTTCATTGTGATGACTTTGAGTCTTGA 1047 0.468 MGKHNQRQKTNATTNDNNLNTTNTVTNKVKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDDEEAAAHAYDLAALKYWGQDTILNFPLSTYQNELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNNNDNTANSNVLDANPNSETNFTPNSNQEQGFNFFQSQESTVTQPRSSGATSALGLLLQSSKFKEMMEMTSAADLSTAASGSELVPCTFPDDIQTYFECEDSNRYGEGDDNMFGELNGFVPHMFHCDDFES* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0372 348 MobiDBLite consensus disorder prediction 1 30 - -
Vra5g0372 348 SUPERFAMILY DNA-binding domain 46 115 IPR016177 GO:0003677
Vra5g0372 348 MobiDBLite consensus disorder prediction 1 47 - -
Vra5g0372 348 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 333 - -
Vra5g0372 348 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 1 333 - -
Vra5g0372 348 SUPERFAMILY DNA-binding domain 148 209 IPR016177 GO:0003677
Vra5g0372 348 SMART rav1_2 149 213 IPR001471 GO:0003700|GO:0006355
Vra5g0372 348 SMART rav1_2 47 119 IPR001471 GO:0003700|GO:0006355
Vra5g0372 348 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Vra5g0372 348 PRINTS Ethylene responsive element binding protein signature 189 209 IPR001471 GO:0003700|GO:0006355
Vra5g0372 348 ProSiteProfiles AP2/ERF domain profile. 47 113 IPR001471 GO:0003700|GO:0006355
Vra5g0372 348 MobiDBLite consensus disorder prediction 222 247 - -
Vra5g0372 348 ProSiteProfiles AP2/ERF domain profile. 149 207 IPR001471 GO:0003700|GO:0006355
Vra5g0372 348 CDD AP2 148 209 IPR001471 GO:0003700|GO:0006355
Vra5g0372 348 Pfam AP2 domain 47 105 IPR001471 GO:0003700|GO:0006355
Vra5g0372 348 Pfam AP2 domain 148 199 IPR001471 GO:0003700|GO:0006355
Vra5g0372 348 Gene3D AP2/ERF domain 148 209 IPR036955 GO:0003700|GO:0006355
Vra5g0372 348 Gene3D AP2/ERF domain 47 115 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0372 Vra-Chr5 3836386 3839381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0372 43 240 AP2-EREBP Transcription Factor Family AT5G57390 62.381 9.00e-91 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vra5g0372 AP2 6.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0372 K09285 - gmx:100804555 581.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2416 7 44300265 44302974 Vra5g0372 5 3836386 3839381 PCT