Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0367 ATGGAGGCTCAATTAGAAGGGAAAAATCAGTATTTGTATGGACCTGTGGTGCCAGAGATGAAGAGTGTTGGGAAGAGAAGTTTGGAGTGGGATTTGAATGATTGGAAGTGGGATGGGGATCTTTTCACTGCTACGCAACTGAACTCAGTGCCATCAGATTGTACGAGTCGTCAGCTGTTTCCTGCTGATCCTGAAATTCTCGCAGCTGGTGATGCTTCTAACAGTTTGTCTTCTTCATATGATGATGTTAACCTTGCGGAAGGAAGGAGAGAATTGGAGAAGAGGAGGAGAGGTGTTGCTGATGAAGGTGGGGTGGAGATGAATGATGGAGCTGGTTCTCTTAATTTGAACCTTGGGGTCCAAGTATATCCTATCATAGAAGGGGAGGAAAAAAGTGGAAAGAAGACAAAGATAACTGGGAGTACCTTGAACCGGGCTGTTTGTCAGGTCGAAGATTGTAGGGCTGATCTTAGTAATGCGAAGGATTATCACCGCCGCCACAAAGTTTGTGATATGCATTCTAAGGCAAGCAAGGCACTAGTTGGAAATGTTATGCAGAGATTCTGTCAACAGTGTAGCAGGTTTCACGTTCTTCAAGAATTTGATGAAGGGAAGAGAAGTTGTCGAAGGCGTCTGGCAGGCCACAATAAGAGGAGGAGGAAAACGCATCCTGATGCTAGTGTAGTTAATGACGGCTCTGTGAATGAAGAAAAGGGCAGTAGTTATCTGTTAATGAGTCTGCTAAGGATACTGTCCAATATGCATTCAAATGGTTCAGATAATATGACAAGCCAGGATGTTCTATCCCATCTGCTGAGGAACCTGGCAAGTCTGGCTGGTACAATTAACGGAAGAAATATAGTTTCTTTATTGGAAGGATCTCAAGATTTGGTAAAAGCAGGAACATCTGGAACTGCACCAAATGTTCCTAACACAAATTCTAATGGTCCTGAAACGTCCAGACCTGTTGATACTTCTACTAAGATGGATAATGGTGTAATCAGTCAGGATCCTCCAGAGTCTATGGTCCAATGTGAGATGACTCCTGCTAATGGTATGCCTAAAGGATTTATAGCTTCAGGCAGTGATGGAATAGGAAGTTCAAAATCTCCTTCATTACCACAGTTGTCAAATGCACTTCTGTCACGGGATAGTCTTCCACCCTATTCAGTCTCAGCAGAGACTACGGTTGGAAGAATTGGGTTAAGTAATATTGACCTGAATAGTGCATATGATGATGTACAGGATTATGTCGAGAACACAAGAAATTCTCGTCCTCCTTTGCCTTCAGGGAATGGGTCCCTTGATAATCCTTTATGGGTCCAATGTGACTCTCTCAAGTCAAGTCCACCACAGACAAGTAGAAACTCAGATTCAACCTCTACACAGTCACCATCTAGTTCTAGTGGAGAAGCTCAGAGTCGCACAGATCGAATAGTTTTCAAACTATTTGGCAAGGCTCCAAATGATTTTCCCCATACTCTCCGATCACAGATCCTTAACTGGTTATCCCACAGTCCCACCGAGATAGAGAGCTATATAAGGCCTGGCTGTATCATATTAACTGTATATCTCCGTCTAGAAAATTCCGCTTGGGAAGAGCTATGCCATAATCTAGGATCCAGCTTGAGAAAACTTGCTGTGCCGAATGATTCTTTTTGGAGATCAGGATGGATATATACAAGAGTGCAGCACTCGGTAGCTTTTCTGTATAATGGTCAGGTGGTCTTAGATGTACCATTGCGATTCAAAAGTCCCCAGAATTGTCAGATTTTTTGTGTTAAACCACTTGCTGTTTCTTCAAGTTCTTGTGTTCGATTTATTGTGAAAGGATTCAACCTTTTTTTGTCTAACACCAGGTTGCTCTGTGCACTTGAAGGGAAGTATCTGGTGCAAGATAATTGTTATGATTTGGTTGATGCTGATGCTTCCATTGAACATAATGAGCTTCAGCATCTGAGCTTCTCTTGCAGTATACCGAATGTGACTGGAAGAGGGTTTATTGAGGTGGAAGATAATGGTCTTAGCAGCTGTTCCTTTCCATTCATAGTTGCAGAGCAAGAAATTTGTTCAGAGATATGTAAGCTGGAGAATGTCATTGAGGCAGCCGAGACTGCTGATGACATCCAAATGAGAACTAAACTAATGGAAGAAAAGACTCAAGCATTGTATTTCGTACAAGAAATGGGTTGGCTCCTTCACAGAAACCGAGCGAAAGTTAGGCTGGGTCCTGTGGCACCTCTACAAGATTGCTTCCATTTTAATCGGTTCATGTGGCTTGTTGGCTTCTCTATGGACCATGACTGGTGTGCTGTGATGAAAAAGCTCTTGAACATTATCTTTGAGGGCACTGTGGATATAGGAGAGCATACCTCAGTTGAGTTAGCTTTGTTAAAGATGGATCTTCTGCACAAAGCTGTAAAAAGAAATTGCAGGCCTATGGTGGAACTACTGCTAAAATTTGTGCCAGCTAATGCTTCAGATGGTGGAGACAGTAAAGAGAAGCAAGTCAACAAGTCCCCTAACAGATTCATATTCAGACCTGATTCTGTTGGGCCTGCTGGGTTGACTCCCCTGCATGTTGCAGCAAGTATACATGGTTTGGATAATGTATTGGATGCATTAACTGATGATCCAGGACTGGTGGGAATTGAGGCATGGAAAAGTGCTCAGGACACTACAGGTTTGACCCCTTATGATCATGCATCCCTGCGGGGCTACTACTCCTACATTCAACTTGTCCAAAGGAAAATAAGCAACACATGCAAAAGTGAACATGTGCTTAATATCCCTGGCACTCTTGTAGATAGTAACATAAAGCAGAAGCAATCAGATGGCCATAGGTCATCAAAAGTTTCAAGTTTGCAAACTGAGAAGATTGAAACAACAGCAATGGTGCGACATTGTGGTGTATGCCAGCACAAGTTGGCGTACGGTGGTATGAGAAGTGCACTGGTTTATAGGCCAGCAATGCTGTCAATGGTTGCCATTGCAGCTGTGTGTGTCTGCGTGGCTTTGCTCTTCAAAAGCTCACCCAAAGTCTATTATGTATTCCAGCCATTCAGTTGGGAGTCATTGGAATATGGATCCATGTAA 3096 0.4302 MEAQLEGKNQYLYGPVVPEMKSVGKRSLEWDLNDWKWDGDLFTATQLNSVPSDCTSRQLFPADPEILAAGDASNSLSSSYDDVNLAEGRRELEKRRRGVADEGGVEMNDGAGSLNLNLGVQVYPIIEGEEKSGKKTKITGSTLNRAVCQVEDCRADLSNAKDYHRRHKVCDMHSKASKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHPDASVVNDGSVNEEKGSSYLLMSLLRILSNMHSNGSDNMTSQDVLSHLLRNLASLAGTINGRNIVSLLEGSQDLVKAGTSGTAPNVPNTNSNGPETSRPVDTSTKMDNGVISQDPPESMVQCEMTPANGMPKGFIASGSDGIGSSKSPSLPQLSNALLSRDSLPPYSVSAETTVGRIGLSNIDLNSAYDDVQDYVENTRNSRPPLPSGNGSLDNPLWVQCDSLKSSPPQTSRNSDSTSTQSPSSSSGEAQSRTDRIVFKLFGKAPNDFPHTLRSQILNWLSHSPTEIESYIRPGCIILTVYLRLENSAWEELCHNLGSSLRKLAVPNDSFWRSGWIYTRVQHSVAFLYNGQVVLDVPLRFKSPQNCQIFCVKPLAVSSSSCVRFIVKGFNLFLSNTRLLCALEGKYLVQDNCYDLVDADASIEHNELQHLSFSCSIPNVTGRGFIEVEDNGLSSCSFPFIVAEQEICSEICKLENVIEAAETADDIQMRTKLMEEKTQALYFVQEMGWLLHRNRAKVRLGPVAPLQDCFHFNRFMWLVGFSMDHDWCAVMKKLLNIIFEGTVDIGEHTSVELALLKMDLLHKAVKRNCRPMVELLLKFVPANASDGGDSKEKQVNKSPNRFIFRPDSVGPAGLTPLHVAASIHGLDNVLDALTDDPGLVGIEAWKSAQDTTGLTPYDHASLRGYYSYIQLVQRKISNTCKSEHVLNIPGTLVDSNIKQKQSDGHRSSKVSSLQTEKIETTAMVRHCGVCQHKLAYGGMRSALVYRPAMLSMVAIAAVCVCVALLFKSSPKVYYVFQPFSWESLEYGSM* 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0367 1031 Pfam SBP domain 148 221 IPR004333 GO:0003677
Vra5g0367 1031 MobiDBLite consensus disorder prediction 348 373 - -
Vra5g0367 1031 MobiDBLite consensus disorder prediction 213 234 - -
Vra5g0367 1031 MobiDBLite consensus disorder prediction 301 327 - -
Vra5g0367 1031 SUPERFAMILY Ankyrin repeat 800 914 IPR036770 -
Vra5g0367 1031 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 13 1030 IPR044817 GO:0003677
Vra5g0367 1031 SUPERFAMILY SBT domain 146 226 IPR036893 GO:0003677|GO:0005634
Vra5g0367 1031 Gene3D - 140 209 IPR036893 GO:0003677|GO:0005634
Vra5g0367 1031 Gene3D - 785 954 IPR036770 -
Vra5g0367 1031 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 13 1030 - -
Vra5g0367 1031 MobiDBLite consensus disorder prediction 439 474 - -
Vra5g0367 1031 ProSiteProfiles Zinc finger SBP-type profile. 145 222 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0367 Vra-Chr5 3752241 3762525 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0367 1 1030 SBP-box Gene Family AT3G60030 45.290 0.0 754
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vra5g0367 SBP 5.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0367 - - gmx:100776125 1778.45