Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0360 ATGGAGCAGTTGAAATTGGCTACAAATTCTGACGCCAAAGAGGATAACCCTTTGGGGAACAAGCCAAGAAATAGCAATGCACTTGAGTCTTCTGACAGTCTGAGAAATAGAAAGATATCAGCTCGATGGGATCCAGTTGGAGCATGTCGGCCAATAATTGAAGAAGCGCCTGTTTTTTATCCGACTATTGAAGAATTTGAAGACACACTCAGTTACATAGCAAAGATACGACCCCTAGCTGAGCACCATGGCATATGTAGGATTGTTCCTCCGGCTTGTTGGACTCCACCTTGTCCTCTTAAGGAGAAAGATCTATGGGAAAATGCTGAATTTCCCACCCGTATTCAGCAAATTGATTTGCTTCAAAATAGGGAACCTATGAAGAAAAAATGTAGGGGAAGGAAGCGAAAACGCAGAAGGCTCTCCAGAACAGGCACATGTAGGAGGAAGCCTGCCGGTGCAGCTTCTCATGCTAAGAATGCTTCTGATTCCGAAGAGAAATTTGGGTTCCAATCAGGATCAGACTTCACGCTTAAAGACTTTCAGCAATATGCTGATTATTTTAAGGAATGCTATTTTGGGTTGAAAGAAGCTGATAGAGACAGAACAGTTAGTGACAGTAACCATCAGAAGAGATGGGAGCCCTCTGAGGAAGAAATTGAAGGTGAATACTGGCGCATAATTGAGCAACCAAGTGATGAGGTTGAGGTGTATTATGGAGCTGACTTGGAAACTGGAGCACTTGGAAGTGGTTTTCCTAAGGCATCATCCATAATAACGAGTGACTCAGCTCAATATGCCCTGTCTGGTTGGAATCTGAACAATTTCGCCCGACTGCCAGGTTCTGTACTGAGCTACGAAGGAAGTGACATATCTGGAGTTCTAGTGCCATGGCTGTATGTTGGCATGTGTTTTTCGTCATTTTGCTGGCATGTTGAGGATCATCACCTTTATTCACTAAACTATTTGCACTGGGGTGACCCTAAAGTATGGTATGGTGTACCTGGAAGCCATGCACCAGCCTTGGAAAATGCAATGAGGAAACACTTGCCTGATTTATTTGAGGAACAACCACATCTACTAAATGAACTGGTTACCCAATTTTCTCCTTCTATTCTTAAATCTGAGGGAGTGCCTGTGTATCGCACAGTCCAGCATTCTGGGGAGTTTGTTATTACCTTTCCGAGGGCATATCATTCTGGCTTTAATTGTGGCTTCAACTGTGCAGAGGCAGTGAATGTGGCTCCTATTGATTGGTTAATGCATGGACAGAATGCTGTTGAGATTTACAGTTCACAATGCCGTAAGACATCGTTGTCCCATGACAAGCTGTTATTTGGATCAGCACTGGAAGGTGTACGGGCCATTACAGAGCTAGCTCTTGGAAAGGAATCTCCGAAAATTTTGAAATGGAGGAGTGTCTGTGGGAAAGATGGAGATCTTACCAAGGCAGTTAAGGCAAGGATAAAAATGGAAGATGAAAGGCTAGACTGTCTTCCAACTCATCTTAAGTTGCTCAAGATGAACAGTGACTTTGATTTGTACACGGAAAGAGAATGCTTCTCTTGCTTCTATGACTTGCACTTATCTGCTGTGGGTTGTGAGTGCTCTCCTGACAGATATTCTTGTCTTAAGCATGCTAATTTGTTCTGCTCATGCGCAATGGAGAAAAGGTTTGTTCTGCTACGATATACTAGAAATGAGCTAACTAAACTGGTTGAAGCATTAGAAGGAGAGTCACATGCTATTAAGGTGTGGGCAAGTAAAAACTGTGGAGTGGTTTCTGCCAATGCCAATGAGGTTTGCATAGATAAATCAGATGTTGAGAAAGATATCTACAAAACCAAAAATTGTGAAGAAATAGATAGCTTAACTGGCTGTGAAGGAACCAAGGATAGGTCAAATTTAAACACACCAAGTAGTCCTAATAGTCATATTACTTCTGATATAGTGCAGTTTGAGTCTCACCCTGTAACTTCTAGTGCAGCATATGACAGTATAGATAGTCATAACGACAATAAGAGTGATAAAAAGTTTGTCACAGACAAGGAATATAAAATGGATCAAGATGGTTATCTGGATTTGAATCTTGATGTTTTCTCTGGTGAAAATGAAAACCATGTGCTGGATATTGCTGATAACCTTCACAGCGAAGGTATTTCAGTAGAGGAAAAAGTATGTTGTTCAAAGGCCAAAAAGGAAGAAGACAGCATGGAACTTGGTGGTGAGGGTAACTTGTCAAACTCGACTTCTGTTCTAAACACAGATTTTTCGTCAAGTTCAATGGGCAATCACAATTATTGTACATTTGATGGTGGAAAATTTGAGCTGGATCTGCAAACAGATTCTGGGAAGCTTCACAACTATCTATCCAAAGCAGGAGCCATAGACACCACAGATACTCAAATGGATTTTACAGATGAAAGCTGCTTGGTGAGGATGTTTGGTACTTCTGTCGAGCCTGTAAGTTTGGGATCTGTTGTTCATGGAAAGCTGTGGTGCAGTAAGCGTGCGATATATCCAAAGGGATTCAAGAGTAGAGTTCTCTTCTTTAGCATTCTTGATCCAACGATAATCTGTAGCTATATTTCTGAAGTCATTGATGCTGGATTTCTTGGACCCCTTTTCAAGGTTACCATGGAAGATTGTCCAAATGAGGCTTTCACAGATACCTCATCAGATAATTGCTGGGAATCAGTTCTGAAGAGATTACATCATGAAATCAAGAGGCGGAGGAGTCTAGGTGAACTAGAACTTCCTAACATACAGCTCCTGAAAAGCATCAATGGTCATAGAATGTTTGGCTTCCTTTTACCATCTATTATTCAGGCCATCGAAATTCAAGATCCCTCTCATATGTGTGTAGAGTACTGGAATCACAAAGTTGCCCCTTCAGGCAGTGTTGTCGATAACTTGACGTACGGTTCCAGAAGCCCTTTCGGTGATATCAATACCAAAATTTTTGGTATCAATTTGATTAAGCGTAACTTTTTTCAAGAGATGAAACAAATACTACAAAGGGCAAGTCCTGATGAGTTAGGCACACTGCATAAGTTACTCAGCTCTGATGCATGGTACTGTGAGTGGAAAGTGACATTGATGGCACTGATGGATGAGATTCGGAAAGCTTGTCAATGA 3138 0.4152 MEQLKLATNSDAKEDNPLGNKPRNSNALESSDSLRNRKISARWDPVGACRPIIEEAPVFYPTIEEFEDTLSYIAKIRPLAEHHGICRIVPPACWTPPCPLKEKDLWENAEFPTRIQQIDLLQNREPMKKKCRGRKRKRRRLSRTGTCRRKPAGAASHAKNASDSEEKFGFQSGSDFTLKDFQQYADYFKECYFGLKEADRDRTVSDSNHQKRWEPSEEEIEGEYWRIIEQPSDEVEVYYGADLETGALGSGFPKASSIITSDSAQYALSGWNLNNFARLPGSVLSYEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGSHAPALENAMRKHLPDLFEEQPHLLNELVTQFSPSILKSEGVPVYRTVQHSGEFVITFPRAYHSGFNCGFNCAEAVNVAPIDWLMHGQNAVEIYSSQCRKTSLSHDKLLFGSALEGVRAITELALGKESPKILKWRSVCGKDGDLTKAVKARIKMEDERLDCLPTHLKLLKMNSDFDLYTERECFSCFYDLHLSAVGCECSPDRYSCLKHANLFCSCAMEKRFVLLRYTRNELTKLVEALEGESHAIKVWASKNCGVVSANANEVCIDKSDVEKDIYKTKNCEEIDSLTGCEGTKDRSNLNTPSSPNSHITSDIVQFESHPVTSSAAYDSIDSHNDNKSDKKFVTDKEYKMDQDGYLDLNLDVFSGENENHVLDIADNLHSEGISVEEKVCCSKAKKEEDSMELGGEGNLSNSTSVLNTDFSSSSMGNHNYCTFDGGKFELDLQTDSGKLHNYLSKAGAIDTTDTQMDFTDESCLVRMFGTSVEPVSLGSVVHGKLWCSKRAIYPKGFKSRVLFFSILDPTIICSYISEVIDAGFLGPLFKVTMEDCPNEAFTDTSSDNCWESVLKRLHHEIKRRRSLGELELPNIQLLKSINGHRMFGFLLPSIIQAIEIQDPSHMCVEYWNHKVAPSGSVVDNLTYGSRSPFGDINTKIFGINLIKRNFFQEMKQILQRASPDELGTLHKLLSSDAWYCEWKVTLMALMDEIRKACQ* 1046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0360 1045 ProSiteProfiles FYR domain FYRN motif profile. 811 869 IPR003888 GO:0005634
Vra5g0360 1045 Pfam C5HC2 zinc finger 520 572 IPR004198 -
Vra5g0360 1045 Gene3D - 815 955 - -
Vra5g0360 1045 PANTHER DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED 10 1044 - -
Vra5g0360 1045 MobiDBLite consensus disorder prediction 129 146 - -
Vra5g0360 1045 MobiDBLite consensus disorder prediction 1 33 - -
Vra5g0360 1045 PANTHER LYSINE-SPECIFIC DEMETHYLASE 10 1044 - -
Vra5g0360 1045 Gene3D Cupin 41 415 - -
Vra5g0360 1045 Pfam JmjC domain, hydroxylase 298 414 IPR003347 -
Vra5g0360 1045 Pfam F/Y-rich N-terminus 822 866 IPR003888 GO:0005634
Vra5g0360 1045 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Vra5g0360 1045 SMART cupin_9 268 431 IPR003347 -
Vra5g0360 1045 Pfam jmjN domain 57 90 IPR003349 -
Vra5g0360 1045 Pfam F/Y rich C-terminus 873 961 IPR003889 GO:0005634
Vra5g0360 1045 MobiDBLite consensus disorder prediction 13 33 - -
Vra5g0360 1045 ProSiteProfiles FYR domain FYRC motif profile. 871 961 IPR003889 GO:0005634
Vra5g0360 1045 SMART fyrc_3 875 967 IPR003889 GO:0005634
Vra5g0360 1045 MobiDBLite consensus disorder prediction 129 167 - -
Vra5g0360 1045 SMART fyrn_3 825 869 IPR003888 GO:0005634
Vra5g0360 1045 ProSiteProfiles JmjC domain profile. 268 431 IPR003347 -
Vra5g0360 1045 SUPERFAMILY Clavaminate synthase-like 232 446 - -
Vra5g0360 1045 SMART JmjN_1 55 96 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0360 Vra-Chr5 3691980 3699196 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0360 792 993 JUMONJI Transcription Factor Family AT1G30810 43.925 5.33e-48 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vra5g0360 JmjC 7.8e-47 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0360 - - gmx:100801775 1769.59