Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0351 ATGAAAGATAAAGCTGTGTCAGACAACAGTGTTCCTCGAATAAAGCATGATGTTTTTGTTAGCTTCAGGAGTGAGGACATCCGTCGTGGGTTTCTTACTCATTTGACAAACACTTTTCAGGAAAAGAAAATAAAAGCCTTTGTAGATGGTCAAACTCTTAAAGGAGAAGCCATTTGGCCTTCAATTGTTGGTGCAATTGAAGCATCATCCATTTCAGTTATCATATTCTCACCAGGCTATGTTTCTTCTGAGTGGTGTCTAGAAGAACTTGCAAAAATATTTGAATGCAGAGTGAAATACGGACATACTATTATCCCTGTTTTCTACCATGTAGAGCAGGCAGATATACTATATCGTTCTGGCAGATACAGAAGAAGTCCATTTGCTAAAGATGACAGTAAACATGAGTCCAAATTGCAAAGTTGGAGATCTGCTTTGGAAAAATCTGCACAATTATCAGGAATTGAGTCATCAAAGATTCGAGACGATGATAAGTTGGTTAAGGAAATTGTCAATCATGTGCTGACGAGGTTGAGAATGGTTAACTCAAAAGGGCAAGTAGGAATTGACAAAAAGATTGAAGAAGTAGTATCATGGATAAAAGAAAATCCAAAACAGACTCGTCTTATTGGAATATGGGGGAAGGGAGGTGTTGGCAAGACAACTCTTGTAGAAGAAGTGTATAACAAACTACAATCTCAATATGAAGGTTGTTATTTCTTAGCCCACGTAACAGAAGAGTTAAGCAGACATGGAATACTTTCATTGAAGGAAAATTGTTTTTCTAAACTCCTGGGATATGATGTGAAAATTGTCTCGCCAAATTCGTTGCCCAAAGATATTGTTAGGAGAATTGAAAGTATGAAGGTTCTAATTGTTCTTGATGATGTTAATGATTCTGAACACCTAGAAAAGTGGTTGGAAATTCTAGGTAATTTTGGATCAGGCAGCAGAATAATTGTAACTACTAGACATTTGGAAGTGCTTGAAGCCAACAAAGCTGACAAGAAATACCAGCTTGGAGAATTAAGTTCTGATGAAGCACTTACACTTTTCAATTTGAATGCCTATAACCAGAGTGATTATAGAAGGGAGTACAATAGGCTATCAGAATGTGTGGTCCTTTATGCTAAAGGTATTCCATTGGTGATTAAAGTTTTGGCTGGTCATCTGCGTGGAAAGAAAAAGGAAGAATGGCAACGTGAGTTAGATAAGCTTGAAAAAATGCCTCAGAGGAAAGTTTATGATGTAATGAAACTAAGTTATGATGGTCTAGAGCACAAACAGAAACAAATGTTTCTAGACCTTGCATGTTTCTTTCTGAGAACACATGAACGAGTAAATGTTGGCTATCTGAAATCTTTATTGAAAGATGATGAAAGTGATAACTCAATTGATTTTGAGTTAGGAAGGATGAAAGACAAAGCTCTTATAACTTTCTCAGAGGATAATAACTTTGTATCAATGCACGATAATTTACAACAAATGGCTTGGGAAATTGTTCGCCAAGAGTCTATTGAAGATCCTGGAAAACGCATTCGGTTCTGGAATCCTAGTGAAACATATGAAGCATTGAAAAATGTCAAGGGTATTGATTCCATTAGAAGCATAGTACTTCACTGGCCAGCAATTAAGAAGGAAAGGTTAAGGCCTCATATATTTGCAAAGATGAGCAGACTGCAATTTCTGGAAATTGATGACTTATATCATTATAATTCTGTCAAACCATTTGATATTCATGGTGCTAACACCTGCTGGCCCAAATGGAAAAAGGCTCGGATTGCTGATATTCTTGCTGAAGGACTTCATTTTTTGGCTACTGAGCTGAGATTTCTTTGTTGGTATCACTGTCCTCTAGAGTCCCTGCCAGAGAATTTTTCTGCAGAAAAACTTGTAATCTTGAGATTGCCACACAGCAGAATGGAAAAACTCTGGCTTGGAGTTAAGAATCTGGTGAATTTAAAAGAACTTGACCTTTCTAAATCCAAGAAGTTAAAGGGGTTGCCAGATTTATCAAAAGCCATAAATCTTGAAGTGCTGATTCTCAGGAGTTGTTCCATGTTGACTAGTGTTCACCCATCTATTTTCTCTCTGCCTAAACTTGAGAAGTTGGACCTTGAGAGATGCGAGTCCCTTACAATACTTGCAAGCTGTTCCAATTTACATAGCCTCAGTCATCTCCACCTTGATTTTTGTGAGAATCTAATGAAATTCTCACTGATTTCAGACAATATGAAAGAACTCAGATTGAGATGTTCAAAGATCAAAGCACTTCCTCCATCATTTGGACATCAAAGGAAGCTCGAATTGCTTCATCTGGAAGAAAGTGGCATCGAGAGATTACCTTCTCTGAAAAATCTCACTCAACTTCTACATCTAGATTTAAGCTTTTGTGATAAGCTTCAAACAATAGCTGAGCTTCCACCGTTCCTTGAGAATCTGAATGTCCAATATTGCACTTTACTTCAAACTATACCAAAGCTTCCCTCATCCCTTAAAACGCTAAATACTGAAGCATGTACTTCACTTGAGACTCTACCAGAGCTTCCTCCATCCATTGAAATCCTTAATGTTGAATCATGCTCTTCACTTGGGACAATACCAGAGCTTCCTCCATGTCTTCAAACTTTAAACGTCCAATGTTGCCATTTACTTCGAACTATACCAAAGCTTCCCACATGCCTTAAAACTCTACACACCAAAAACTGCACTTCCCTTCAGAATCTACCACAACTTCCCCCATTCCTTGAAACTCTAAATGCTACATACTGCAAATCATTGAAACGTGTTTTGTTTCTAACAGCAAAAGATGAAAAACTAAAGGAAAACATGAAAATGCTGCTTTTCTGGAATTGCTCAAACTTGGATAAACATTCTCTGGTAGCTATACGGTTGAATATGAAAATCAACATGATGAAATTTGTTGCAAACCATATATCTGCACCGGATCACAGTCATGTTGAAGATTACAGTGATTATGAATATAATTATCATTCTTATCAGGCTGTGTACGCGTATCCAGGAAGCAATTTTCCAGAGTGGTTGGAGTATAAGACAACAGAAGATTATATAATAATTGGTCTCCCTTCTAGCATGAGTTCCTCCCTGGCTGGCTTCGTTTTCTGCTTTGTCCTTGGTGAGTTTCAACACACAGACATAATCAGAAGAGTTGAATTCAAGATCACTGTAAGTGACGGTGGTGGTAAGGATGAAGGTGAAAGGGAGAGTGTAAGAATGTACATGGATTATTGGGATGACACAATTGAATCGGATAACATATGTGTGATGTACGACCAAAGATGTTCCCACTTCCTACTTAGCAGACCCAGAAGACTAACAAGCTTTAAAATCCAGATTACAATGGAAGCACGAATCTCCTTTGATGAATCTTTCTATGTACCGTTGCAGAAGGTTTTAAAAGGTTTTGGAGTCAGTCCAATTTCGTTCGACAAATTGCAAAGCTCAAATTATAAGTTTCGTTAA 3483 0.3758 MKDKAVSDNSVPRIKHDVFVSFRSEDIRRGFLTHLTNTFQEKKIKAFVDGQTLKGEAIWPSIVGAIEASSISVIIFSPGYVSSEWCLEELAKIFECRVKYGHTIIPVFYHVEQADILYRSGRYRRSPFAKDDSKHESKLQSWRSALEKSAQLSGIESSKIRDDDKLVKEIVNHVLTRLRMVNSKGQVGIDKKIEEVVSWIKENPKQTRLIGIWGKGGVGKTTLVEEVYNKLQSQYEGCYFLAHVTEELSRHGILSLKENCFSKLLGYDVKIVSPNSLPKDIVRRIESMKVLIVLDDVNDSEHLEKWLEILGNFGSGSRIIVTTRHLEVLEANKADKKYQLGELSSDEALTLFNLNAYNQSDYRREYNRLSECVVLYAKGIPLVIKVLAGHLRGKKKEEWQRELDKLEKMPQRKVYDVMKLSYDGLEHKQKQMFLDLACFFLRTHERVNVGYLKSLLKDDESDNSIDFELGRMKDKALITFSEDNNFVSMHDNLQQMAWEIVRQESIEDPGKRIRFWNPSETYEALKNVKGIDSIRSIVLHWPAIKKERLRPHIFAKMSRLQFLEIDDLYHYNSVKPFDIHGANTCWPKWKKARIADILAEGLHFLATELRFLCWYHCPLESLPENFSAEKLVILRLPHSRMEKLWLGVKNLVNLKELDLSKSKKLKGLPDLSKAINLEVLILRSCSMLTSVHPSIFSLPKLEKLDLERCESLTILASCSNLHSLSHLHLDFCENLMKFSLISDNMKELRLRCSKIKALPPSFGHQRKLELLHLEESGIERLPSLKNLTQLLHLDLSFCDKLQTIAELPPFLENLNVQYCTLLQTIPKLPSSLKTLNTEACTSLETLPELPPSIEILNVESCSSLGTIPELPPCLQTLNVQCCHLLRTIPKLPTCLKTLHTKNCTSLQNLPQLPPFLETLNATYCKSLKRVLFLTAKDEKLKENMKMLLFWNCSNLDKHSLVAIRLNMKINMMKFVANHISAPDHSHVEDYSDYEYNYHSYQAVYAYPGSNFPEWLEYKTTEDYIIIGLPSSMSSSLAGFVFCFVLGEFQHTDIIRRVEFKITVSDGGGKDEGERESVRMYMDYWDDTIESDNICVMYDQRCSHFLLSRPRRLTSFKIQITMEARISFDESFYVPLQKVLKGFGVSPISFDKLQSSNYKFR* 1161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0351 1160 Pfam Leucine rich repeat 676 732 IPR001611 GO:0005515
Vra5g0351 1160 SMART till_3 15 152 IPR000157 GO:0007165
Vra5g0351 1160 SMART LRR_bac_2 871 891 - -
Vra5g0351 1160 SMART LRR_bac_2 829 849 - -
Vra5g0351 1160 SMART LRR_bac_2 651 671 - -
Vra5g0351 1160 SMART LRR_bac_2 850 870 - -
Vra5g0351 1160 SMART LRR_bac_2 808 828 - -
Vra5g0351 1160 PRINTS Disease resistance protein signature 209 224 - -
Vra5g0351 1160 PRINTS Disease resistance protein signature 284 298 - -
Vra5g0351 1160 PRINTS Disease resistance protein signature 377 391 - -
Vra5g0351 1160 PRINTS Disease resistance protein signature 649 665 - -
Vra5g0351 1160 Gene3D - 11 180 IPR035897 -
Vra5g0351 1160 Gene3D - 342 426 IPR042197 -
Vra5g0351 1160 SUPERFAMILY "Winged helix" DNA-binding domain 413 526 IPR036390 -
Vra5g0351 1160 SUPERFAMILY L domain-like 555 925 - -
Vra5g0351 1160 Pfam Leucine Rich Repeat 630 649 IPR011713 -
Vra5g0351 1160 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 436 IPR027417 -
Vra5g0351 1160 ProSiteProfiles TIR domain profile. 14 178 IPR000157 GO:0007165
Vra5g0351 1160 Pfam TIR domain 15 181 IPR000157 GO:0007165
Vra5g0351 1160 Pfam NB-ARC domain 190 421 IPR002182 GO:0043531
Vra5g0351 1160 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 11 1151 - -
Vra5g0351 1160 Gene3D - 181 339 IPR027417 -
Vra5g0351 1160 Gene3D Ribonuclease Inhibitor 741 934 IPR032675 -
Vra5g0351 1160 Gene3D Ribonuclease Inhibitor 531 740 IPR032675 -
Vra5g0351 1160 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 1151 IPR044974 GO:0006952
Vra5g0351 1160 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 154 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0351 Vra-Chr5 3487698 3491714 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0351 724 982 WRKY Transcription Factor Family AT4G12020 27.419 1.02e-08 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0351 - - vra:106760078 2312.72