Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0345 ATGAGGTTGGACTTCGTCTGTGTATTTATGATAATTCTGTTTGGCCTTGCGAAATTCGGGAAGGCAGAGATTTACATAGTGACTGTTGAAGGAGAGCCTGTTGTAAGTTACAGGGGTGGTGTTGATGGCTTTGAAGCCACTGCGGTGGAATCTGATGATGATGATGATCACAAGCTTGACTCGACGAGTGAGGTGGTGGTTTCTTATGCTCGCCACCTTGAAAAGAGACACGACTTGCTTCTGGGGTTGCTGTTTGAGCGTGGGACGTATGAGAAACTCTATAGCTATCGACATCTTATAAATGGGTTTGCTGTTCATCTTTCCCCCGAACAGGCAGAAACTCTTCGACATGCTCCTGGGGTTAAATCTGTTGAGAGGGACTGGAAGGTGAAGAGGCTCACAACACATACCCCACAATTTTTGGGGCTCCCAACTGGGGTGTGGCCAACAGGTGGTGGCTATGAGAGGGCTGGAGAAGACATTGTGATTGGATTTGTGGACTCTGGAATCTATCCTCACCATCCGAGCTTTACCACTTATAACACTGAACCATATGGACCAGTTTCGAGATATAGAGGAAAATGTGAGGTTGATCCTGGAACTAAAAGAAGTTTTTGTAATGGGAAAATTATCGGAGCACAACATTTTGCGCAAGCTGCAATAGCTGCGGGGGCATTTAACCCTTCAATTGATTTTGATTCACCACTCGATGGAGATGGGCATGGGAGTCATACAGCCTCTATTGCAGCTGGAAGAAATGGAATTCCAGTGAGGATGTACGGGCATGAATTCGGGAAAGCAAGTGGAATGGCTCCCCGTGCCAGGATTGCTGTGTATAAAGCACTTTATAGACTTTTTGGAGGATTTATTGCGGATGTAGTTGCTGCAATTGATCAGGCTGTGCATGATGGGGTGGATATACTTAGCCTATCAGTTGGACCAAATAGTCCTCCATCAAACACCAAAACTACATTTTTGAATCCTTTTGATGCCACACTTCTTGGAGCTGTGAAAGCTGGTGTGTTTGTCGCACAGGCTGCTGGAAACGGTGGTCCTTTTCCCAAGTCATTAGTTTCATACAGTCCATGGATAGCAACAGTGGCAGCTGCAATTGATGATCGTAGATACAAAAACCATTTGATCCTTGGAAATGGAAAAATCTTGGCTGGAATTGGGTTGTCACCTTCTACACGTATAAACCAAACATACAAATTGGTTGCCGCAAATGATGTGCTTCTTGATTCTTCGGTTACGAAGTACAGCCCCACTGATTGTCAGAGGCCAGAAGTTTTAAACAAGAACTTAATAAAGGGAAATATTCTTCTCTGTGGCTATTCTTACAATTTTGTTGTTGGTTCTGCATCAATAAAACAGGTCTCAGAAACAGCAAAGGCCCTTGGAGCAGTTGGATTTGTTCTGTGTGTTGAAAATGTTTCTCCTGGAGCAAAATTTGATCCGGTCCCCGTTGGCATTCCCGGGATTCTTATCACCGATGCCAGCAAATCAAAGGAACTGATAGATTATTATAATATTTCCACACCAAGAGACTGGACTGGAAGGGTGAAGACTTTCACAGGTACAGGTAAAATTGAGGACGGTTTGATGCCTATTCTCCACAAATCTGCGCCACAAGTAGCAGTTTTTTCTGCTAGAGGACCAAATATAAAGGACTTTAGCTTCCAAGAGGCAGATCTTCTCAAACCAGATATATTAGCTCCGGGTTCTTTGATTTGGGCTGCTTGGTCTCTAAATGGAACCGATGAGCCAAATTATGTTGGAGAGGGATTTGCCATGATATCTGGGACCAGTATGGCTGCACCACATATAGCTGGAATTGCTGCTCTTATAAAGCAAAAACATCCACATTGGAGTCCTGCTGCCATTAAATCAGCCTTGATGACGACATCTACAACTCTAGACAGAGCAGGAAATCCTATTCTAGCACAGCAATATTCTGAATCAGAAGCTATGAACCTGGTCAGAGCCACTCCTTTTGATTACGGGAGTGGACACGTTAATCCAAGAGCTGCCTTGGACCCTGGCCTAGTCTTTGACGCAGGGTATGAGGATTATCTAGGGTTCTTGTGCACAACACCTGGCATTGACGTTCATGAGATAAAGAACTACACAAACTCGCCATGTAACAACAGCCTGGGCCACCCATCAAATTTAAACACTCCATCCATTACAATTTCCCATCTTGTAAGAACTCAAATTGTCACACGCACTGTCACGAATGTTGCTGATGAGGAAGAAACCTACGTGATGACAGCCAGGATGCAACCAGCAGTTGCCATTGACGTGAACCCTCCAGCAATGACCATTAGAGCAGGTGCATCACGTAAGTTTACTGTGACACTTACTGTTCGGTCAGTGACAGGATCGTATAGTTTTGGAGAGGTGTTAATGAAAGGAAGCAGAGGGCACAAGGTGAGGATCCCTGTTCTTGCCAATGGATACTCAAGATAG 2469 0.4459 MRLDFVCVFMIILFGLAKFGKAEIYIVTVEGEPVVSYRGGVDGFEATAVESDDDDDHKLDSTSEVVVSYARHLEKRHDLLLGLLFERGTYEKLYSYRHLINGFAVHLSPEQAETLRHAPGVKSVERDWKVKRLTTHTPQFLGLPTGVWPTGGGYERAGEDIVIGFVDSGIYPHHPSFTTYNTEPYGPVSRYRGKCEVDPGTKRSFCNGKIIGAQHFAQAAIAAGAFNPSIDFDSPLDGDGHGSHTASIAAGRNGIPVRMYGHEFGKASGMAPRARIAVYKALYRLFGGFIADVVAAIDQAVHDGVDILSLSVGPNSPPSNTKTTFLNPFDATLLGAVKAGVFVAQAAGNGGPFPKSLVSYSPWIATVAAAIDDRRYKNHLILGNGKILAGIGLSPSTRINQTYKLVAANDVLLDSSVTKYSPTDCQRPEVLNKNLIKGNILLCGYSYNFVVGSASIKQVSETAKALGAVGFVLCVENVSPGAKFDPVPVGIPGILITDASKSKELIDYYNISTPRDWTGRVKTFTGTGKIEDGLMPILHKSAPQVAVFSARGPNIKDFSFQEADLLKPDILAPGSLIWAAWSLNGTDEPNYVGEGFAMISGTSMAAPHIAGIAALIKQKHPHWSPAAIKSALMTTSTTLDRAGNPILAQQYSESEAMNLVRATPFDYGSGHVNPRAALDPGLVFDAGYEDYLGFLCTTPGIDVHEIKNYTNSPCNNSLGHPSNLNTPSITISHLVRTQIVTRTVTNVADEEETYVMTARMQPAVAIDVNPPAMTIRAGASRKFTVTLTVRSVTGSYSFGEVLMKGSRGHKVRIPVLANGYSR* 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0345 822 Pfam Peptidase inhibitor I9 25 131 IPR010259 -
Vra5g0345 822 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 18 132 IPR037045 -
Vra5g0345 822 CDD PA_subtilisin_like 380 518 - -
Vra5g0345 822 Gene3D - 373 538 - -
Vra5g0345 822 SUPERFAMILY Subtilisin-like 133 682 IPR036852 GO:0004252|GO:0006508
Vra5g0345 822 CDD Peptidases_S8_3 134 637 IPR034197 -
Vra5g0345 822 Pfam Subtilase family 158 643 IPR000209 GO:0006508|GO:0008236
Vra5g0345 822 Gene3D - 695 819 - -
Vra5g0345 822 SUPERFAMILY Protease propeptides/inhibitors 90 130 - -
Vra5g0345 822 ProSitePatterns Serine proteases, subtilase family, serine active site. 601 611 IPR023828 -
Vra5g0345 822 Gene3D Peptidase S8/S53 domain 160 691 IPR036852 GO:0004252|GO:0006508
Vra5g0345 822 Pfam Fibronectin type-III domain 723 816 IPR041469 -
Vra5g0345 822 ProSiteProfiles Serine proteases, subtilase domain profile. 127 678 - -
Vra5g0345 822 PANTHER CUCUMISIN-RELATED 14 821 - -
Vra5g0345 822 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 163 174 IPR023827 -
Vra5g0345 822 PRINTS Subtilisin serine protease family (S8) signature 158 177 IPR015500 -
Vra5g0345 822 PRINTS Subtilisin serine protease family (S8) signature 237 250 IPR015500 -
Vra5g0345 822 PRINTS Subtilisin serine protease family (S8) signature 600 616 IPR015500 -
Vra5g0345 822 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 14 821 IPR045051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0345 Vra-Chr5 3401302 3408069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0345 3 822 Subtilisin-like Serine Gene Family AT4G30020 78.563 0.0 1343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0345 - - gmx:100784999 1558.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0345 5 3401302 3408069 Vra5g0345 5 3401302 3408069 ECH
Vra7g2523 7 45532745 45539665 Vra5g0345 5 3401302 3408069 PCT