Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0338 ATGCGGGATGCGGAGAATTTAAATAAGAAAGGATCTGGAAAATCCAGTTACTCAAAGGAACAGATTAAGTCCAAGCTATTTTCATCAAAATTAAAAGCAAGTAGCACAAAAAACAGAAGGAAGGAACACAAAGAGAAGTCAAGGTCTCATAAACTGAGAGTTGGTACAAACACATCAAAGAAAAGAGTTGCTGATTCTTCTATCAAGGCACCACTTGAGGACTCTTCAAATAAAAAAGTGATTATTAGAAAAACTCTCCATAAAACTGATGAGAACTCTTCACGTATGGTGTCTTCAACAAAGCTACAAGGAAGAAAAAATCCTCATATTTCTAGAAAAGAGGGGAATGGTGTTGATGAAGAGGCAAAAATTAAAAAACGTAAAAGGAACAAAAAGAAGAGCAGACAAAGAGACAGCATGGATCATGATGATGCTTCACGCCTTCGAAGGAGAACAAGATACCTCTTGATAAAAATGAAGCTGGAGCAAAACCTTATTGATGCTTACTCTGGAGAAGGTTGGAAAGGTCAAAGTCGAGAGAAGATTAGGCCAGAAAAGGAGCTACTAAGAGCGAAAAAGCAGATTTTAAAATGTAAACTTAGTATTCGTGATGTTATACGCCAGCTGGATTCTCTTAGTTCTGTGGGTAGCATTGAAGATTCTGTCATTGCTCCAGATGGATCTGTTTATCATGAACATATATTCTGTGCCAATTGCAAACTACATGAAGCTTTCCCAGATAATGATATTATACTCTGTGATGGCACATGCAATCGGGCTTTTCACCAAAGATGTCTCAATCCTCCTTTGGATACTGAAAATATTCCTCCTGGAGATCAAGGCTGGTTTTGCAAGTTTTGTGAATGTAAGATAGAAATTATAGAGTCAACAAATGCCCATCTTGGGACTCAATTTTCCTTGGACAGTAGTTGGCAGGATATATTTAAGGAAGAGGCTGCTGTGCCTGATGGTGATATTGCACTACTAAGTCCAGAAGAAGAATGGCCATCAGATGATCCTGAAGATGATGATTACAATCCAGAGAGGAAAGAAGACAGCCACAGCATAAATACAGAAGGTGCTGATGAAAATGCATCCAATGATTCAACCAGTTCTTTGAGTTTGTGGTCTTTGAATGAAGAATGTCCTCCTGTTGATGAAGACCTTAGTCGACAATATTATTCTGTCAATAGCTTCATTGATTCTGATGAATCCGGGGAAATAGCATGTGGCCGTAGGCAGCGCAAAGCTGTTGACTACAAGAAACTGTATGATGAAATGTTTGGGAAGGATGCTCCACCTTGTGAACAACCGAGTGAAGATGAAGACTGGGGTCCTGGCAAAAGAAAGCGAAGAGAAAAGGAGTCTGATGCTGTTAATACTCTAATGACTCTGCATGAAAGTGAAAATAAACATCCCAATAATGAGAGTAGTGATAGAATAAGAGAGGGCTCTTCCGGCCTACAAATAAGAAGATCTTGTTTCAGAATTCCACTTGATGCAGTTGAGAAACTTCGGCAAGTTTTTGCAGAGAATGAGCTTCCTCCAAGATCCGTGAAGGAGGGTCTTTCAAAAGAGTTGGGACTAGATCCTGAAAAGGTTAGCAAATGGTTCAAAAATGCACGTTACTTGGCGCTTAAAACCAGAAAGTATCAATCAGAAGAACAGCTTCAGAGTTTCACATCTCAGATATCAAAACATTCTACATCTCCAAACATGGAGAAAGATGAGTTTCTGAAATCACAAGCCCCCAAAATTACTCTGGTTCATTCCCAGAAGGATGGTCAAAGCATCACGGGACAAGAGAAAAATAAATTATGCAACAGTCTTTTGAAGAGAAGGAAGCAAAAACCATCTCCACCTCTGTCAAGAGAAAACAGCAACAAAGAATCCATGGAGATGAGTGATGATGTTAATCTGAAGAAGCTTTTGAAAGAAAGGAAAAAAAGGGTAAATTTTATATATGAAGGAGACTCTCAGATAGCAGAGTTGGAATTTGAAAGACTGAGCAAAGTGAAGAGTAAAGTAGATAGCATGAAGCAAAAACTAAATGAAGTTCAAAATTGCAGAGCTAAGGGATCAACAAATGAACCCTCTATTATATATGTTCCCACAGCCCAATTAAGGGAAAAGGTTGAGTAA 2142 0.387 MRDAENLNKKGSGKSSYSKEQIKSKLFSSKLKASSTKNRRKEHKEKSRSHKLRVGTNTSKKRVADSSIKAPLEDSSNKKVIIRKTLHKTDENSSRMVSSTKLQGRKNPHISRKEGNGVDEEAKIKKRKRNKKKSRQRDSMDHDDASRLRRRTRYLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELLRAKKQILKCKLSIRDVIRQLDSLSSVGSIEDSVIAPDGSVYHEHIFCANCKLHEAFPDNDIILCDGTCNRAFHQRCLNPPLDTENIPPGDQGWFCKFCECKIEIIESTNAHLGTQFSLDSSWQDIFKEEAAVPDGDIALLSPEEEWPSDDPEDDDYNPERKEDSHSINTEGADENASNDSTSSLSLWSLNEECPPVDEDLSRQYYSVNSFIDSDESGEIACGRRQRKAVDYKKLYDEMFGKDAPPCEQPSEDEDWGPGKRKRREKESDAVNTLMTLHESENKHPNNESSDRIREGSSGLQIRRSCFRIPLDAVEKLRQVFAENELPPRSVKEGLSKELGLDPEKVSKWFKNARYLALKTRKYQSEEQLQSFTSQISKHSTSPNMEKDEFLKSQAPKITLVHSQKDGQSITGQEKNKLCNSLLKRRKQKPSPPLSRENSNKESMEMSDDVNLKKLLKERKKRVNFIYEGDSQIAELEFERLSKVKSKVDSMKQKLNEVQNCRAKGSTNEPSIIYVPTAQLREKVE* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0338 713 ProSiteProfiles 'Homeobox' domain profile. 488 548 IPR001356 GO:0003677
Vra5g0338 713 Gene3D - 490 559 - -
Vra5g0338 713 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 227 284 IPR013083 -
Vra5g0338 713 MobiDBLite consensus disorder prediction 107 125 - -
Vra5g0338 713 Pfam PHD-finger 235 290 IPR019787 -
Vra5g0338 713 ProSiteProfiles Zinc finger PHD-type profile. 233 290 IPR019787 -
Vra5g0338 713 Pfam Homeodomain 501 543 IPR001356 GO:0003677
Vra5g0338 713 MobiDBLite consensus disorder prediction 76 91 - -
Vra5g0338 713 CDD PHD_PRHA_like 235 287 IPR045876 -
Vra5g0338 713 MobiDBLite consensus disorder prediction 322 372 - -
Vra5g0338 713 ProSitePatterns Zinc finger PHD-type signature. 236 287 IPR019786 -
Vra5g0338 713 MobiDBLite consensus disorder prediction 610 636 - -
Vra5g0338 713 MobiDBLite consensus disorder prediction 1 145 - -
Vra5g0338 713 MobiDBLite consensus disorder prediction 428 460 - -
Vra5g0338 713 SUPERFAMILY Homeodomain-like 491 557 IPR009057 -
Vra5g0338 713 CDD homeodomain 496 543 IPR001356 GO:0003677
Vra5g0338 713 Coils Coil 669 689 - -
Vra5g0338 713 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 6 692 - -
Vra5g0338 713 MobiDBLite consensus disorder prediction 10 33 - -
Vra5g0338 713 MobiDBLite consensus disorder prediction 34 57 - -
Vra5g0338 713 SMART HOX_1 490 552 IPR001356 GO:0003677
Vra5g0338 713 PANTHER POLYCOMB PROTEIN PCL 6 692 - -
Vra5g0338 713 MobiDBLite consensus disorder prediction 332 346 - -
Vra5g0338 713 MobiDBLite consensus disorder prediction 428 486 - -
Vra5g0338 713 SUPERFAMILY FYVE/PHD zinc finger 227 292 IPR011011 -
Vra5g0338 713 SMART PHD_3 235 288 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0338 Vra-Chr5 3326955 3333200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0338 135 556 Homeobox Transcription Factor Family AT4G29940 58.005 4.44e-156 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Vra5g0338 Homeodomain 7.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0338 - - gmx:100816912 1133.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2527 7 45565335 45569795 Vra5g0338 5 3326955 3333200 PCT