Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0335 ATGGCGACGGAGCAAACCAAATTCAGCGTGTTGTGCAGCCTCTTCACGTGGACGCAGCGGAGCAAGTCGGCGGCGAAGAAGCGCTCCAAGTTCCGTAAGTTCCTCGACGCCTTCTGCATTGACCGCAACTTCTTCCCCGCCATTCGCCTCATTCTCCCCAACCTCGATCGTGAGCGCGGCTCCTATGGCCTCAAGGAGTCCGTTCTCGCCACCTCCCTCATCGACGCCCTCGGCATCTCCCGTGACTCCCCCGATGCCCTCCGACTCATCAATTGGCGTAAGGGTGGCGCTGCCACCGGCGCTACAGCAGGAAATTTTGCCCTCGTCGCCGCCGAGGTGCTGCACCGCAGGCAAGGGACCGCTTCGGGAGGGTTGACGATAAGGGAGTTGAATGAGTTGCTTGACCGGTTGGCTTCCGGTGAGAACAGGGCTGAGAAAATTTTGGTTCTTTCTACCCTTATCCAAAAGACAAATGCACAGGAAATGAAGTGGATTATCATGATAATCCTGAAAGATCTAAAGCTGGGAATTAGTGAAAAAAGCATTTTTCATGAGTTCCATCCTGATGCAGAAGACTTGTTTAATGTTACCTGTGACTTAAAACTAGTATGTGAAAAGCTAAGGGATCGGAATCAGCGGCATAAGCGGCAGGATATTGAAGTTGGGAAAGCTGTGCGCCCCCAATTAGCTAAGAGAGTTGCTAATGCAACTGAAGCATGGAAGAAGCTTCATGGGAAGGAAGTGGTTGTTGAGTGCAAATTTGATGGCGACCGAATTCAAATTCATAAAAACGGAACTGAGATACATTTTTTCTCAAGGAACTTTATAGATCATTCTGAATATGCACATGCAATGTCAGATATCATAATACAAAATATTCTTGTAGATAGGTGTATCCTTGATGGTGAAATGTTGGTGTGGGACACATCCTCAAAACGCTTTGCTGAGTTTGGCTCAAATCAGGAAATAGCCAAGGCAGCAAGAGATGGACTTGATAGTGACAGACAGTTATGCTATGTTGCGTTTGATATCCTTTATTTTGGAGATACTAGTGTGATTCACCAATCTTTGAAGGAAAGACATGAGATTTTATGTAAAGTTGTTAGGCCAATGAAGGGACGGTTGGAAATTTTGGTACCTAATGCTGGTATCAACAGCCATCTTACTTCAGGTGAACCTTGTTGGTCATTTATTGCTCATAAAGTTGATGAAGTTGAGAAGTTTTTCAAGGAAACCATTGAAAATAGAGATGAGGGAATTGTTTTAAAAGACCGCAGCTCTAAGTGGGAACCTAGTGATCGTAGTGGAAAGTGGCTAAAATTGAAGCCCGAATACATTCAAGCTGGCTCTGATTTGGATGTACTTATCATAGGTGGCTACTATGGTTCTGGACGACGTGGAGGACAGGTTGCTCAATTCTTGGTTGGCCTTGCAGAACGTCAATCTCCAAATGCACAACCTACGCGAGTTGGCACTGGACTCTCTGATGAGGAGCTTGATGTTGTAGTAACCAAACTAAAACCATACTTCAGAAAGTATGAATATCCAAAGAAGAGGCCACCAAGTTTTTATCAAGTAACTAATCATTCGAAAGAGAGACCTGATGTGTGGGTTGATAGCCCTGAGAAATCAATTATTCTGTCTATTACCAGTGATATCCGAACTATAGAATCTGAGGTATTTGCTGCACCTTACAGCCTGAGATTTCCTAGGATTGACAGGGTGAGATATGACAAAGCTTGGAACGAATGCCTTGATGTTCAATCATTTATAGAACTAGTGCATTCTAGCAATGGTACCACACAGAGGGATACAGAATATGGCAGCAAACAGGACAGTAAACCAAAAAGAATGAAATCCTCCACTAGGGGAGACAAGAAAAACATGTCCATTGTTCCTTCTCATTTAATTCAAACTGATATTTCCAGCATTAAGGGGGGCACCTTAATATTTTCAAATATGATGTTCTACTTTGCTAATGTGCCTTCATCGCATTCTCTTGAGTCCTTGCACAAAATAATTGCTGAGAATGGGGGAACTTTTTCAATGAATTTGAACAACTCAGTCACACATTGTGTTGCCGCAGACAGCAAGGGCTTTAAATTTGAAGCAGCAAAGCGTCATGGTGATATCATTCATTATTCTTGGGTACTAGACTGTTATGAACAAAAAAAGCTTGTCTGCTTACAGCCTAAGTACTTCCTTTTCCTATCTGAACTGACAAAGAAGAAGTTCCGAGAAGAAATTGATGAGTTCTCAGACTCTTTCTACTTGGACCTAGATCTTGGAGACATCAAGCAGCTCCTAAGCAATATTAGTAAGTCTGAAGATGTCAGCACTGTCGATCATTACAGGAAAAAATACTGTCCGAAGGATAAGTGGTCTTTCTTTTGTGGATGTTCAATTTATTTCCACACTGCAATACCTTCATTGAAAGGAGATTGGCATTATATATTACAACTTGCTTTGAGGAGATTCAAGCTTGAAGTTCTCATGGGTGGTGGAAAAGTTACCTCTAATCTTACTTCTGCAACCCATTTAGTGGCCTTTCTTGTGCCAGGATGTCTGACTGACTTTGAACAAATACTGAGTAGTTTCACTTCAGTAGAAAGGAAAATTCTCCGAAGCAAGAGGTTGTATATAGTTAATTCCCAGTGGTTGGAAGATTGTTCAGACAGTAGCCAAAGATTACCAGAAGACTCTTACAGTTTGAAGCCCTGGGGAATAGAAGAGACAACTGCTGAAGATTGTGAACAGGACTTGGCGTTAGAGGCTCATCAGTGTGGAGATAACACACAAGACCAAAATACATCTTTCTCTGACAAGGGAAATCGGCAAAGAAGTGAACAAGTTGCATGCGAAGACAGTATGGCCTTCTTATCCGGAGAGAAGGGTATCAAAAGGAAAAGAGGAAGACCTGTGGGCATTGGTATAAAAAATGTAAAACCAATAGGCAAAAAAACTCGAAAAGCACGACCACAAAATGTGAAAAAGCCTACTAAAATATGTGAATATGAATCATCGGATGAAAGTGATTTTCGTGACAAGCAGGAGATTGACACCAGAGCAGGAAGTCTTAACTTTTATAAGAAACATTCAGAACCCAAGGAGAATGAGGAACAAGAAAATGTCCAAGTTTCTAGGACAGTGGAAAGTTCTGAACAAAATAAGGTAGATAACAAGCTGGAGGACTTGAAGGACAATGATCATGAAAGAATGTTGATTCCTGAAATAGAAATGACTGATAGGTACAATGACCAAAACAATGAGGTGAAAGAGAAATTAGACTTTTCTGCTGACCCCCTTCAGGCGATGTTATTTGACATGATTCCTAGTCTTGGCACCCAAAAAGTTGAGCAACCTATGAATCTTAGTGTTAGAGAAGAGAAACTAGCAAAAACCTCCAATGCAGAAACCTCCAATGCAGAAACAGAGCCTATAACTACAAAGAAAAATAAGGTTAGCTTCATGGATGCTGCCAACGAGCTGCTGAAGGACTGGTAG 3504 0.4218 MATEQTKFSVLCSLFTWTQRSKSAAKKRSKFRKFLDAFCIDRNFFPAIRLILPNLDRERGSYGLKESVLATSLIDALGISRDSPDALRLINWRKGGAATGATAGNFALVAAEVLHRRQGTASGGLTIRELNELLDRLASGENRAEKILVLSTLIQKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAKRVANATEAWKKLHGKEVVVECKFDGDRIQIHKNGTEIHFFSRNFIDHSEYAHAMSDIIIQNILVDRCILDGEMLVWDTSSKRFAEFGSNQEIAKAARDGLDSDRQLCYVAFDILYFGDTSVIHQSLKERHEILCKVVRPMKGRLEILVPNAGINSHLTSGEPCWSFIAHKVDEVEKFFKETIENRDEGIVLKDRSSKWEPSDRSGKWLKLKPEYIQAGSDLDVLIIGGYYGSGRRGGQVAQFLVGLAERQSPNAQPTRVGTGLSDEELDVVVTKLKPYFRKYEYPKKRPPSFYQVTNHSKERPDVWVDSPEKSIILSITSDIRTIESEVFAAPYSLRFPRIDRVRYDKAWNECLDVQSFIELVHSSNGTTQRDTEYGSKQDSKPKRMKSSTRGDKKNMSIVPSHLIQTDISSIKGGTLIFSNMMFYFANVPSSHSLESLHKIIAENGGTFSMNLNNSVTHCVAADSKGFKFEAAKRHGDIIHYSWVLDCYEQKKLVCLQPKYFLFLSELTKKKFREEIDEFSDSFYLDLDLGDIKQLLSNISKSEDVSTVDHYRKKYCPKDKWSFFCGCSIYFHTAIPSLKGDWHYILQLALRRFKLEVLMGGGKVTSNLTSATHLVAFLVPGCLTDFEQILSSFTSVERKILRSKRLYIVNSQWLEDCSDSSQRLPEDSYSLKPWGIEETTAEDCEQDLALEAHQCGDNTQDQNTSFSDKGNRQRSEQVACEDSMAFLSGEKGIKRKRGRPVGIGIKNVKPIGKKTRKARPQNVKKPTKICEYESSDESDFRDKQEIDTRAGSLNFYKKHSEPKENEEQENVQVSRTVESSEQNKVDNKLEDLKDNDHERMLIPEIEMTDRYNDQNNEVKEKLDFSADPLQAMLFDMIPSLGTQKVEQPMNLSVREEKLAKTSNAETSNAETEPITTKKNKVSFMDAANELLKDW* 1168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0335 1167 Pfam ATP dependent DNA ligase domain 227 442 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vra5g0335 1167 Gene3D - 1 219 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vra5g0335 1167 Gene3D DNA ligase/mRNA capping enzyme 221 444 - -
Vra5g0335 1167 SUPERFAMILY Nucleic acid-binding proteins 450 595 IPR012340 -
Vra5g0335 1167 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 6 210 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vra5g0335 1167 Gene3D BRCT domain 792 904 IPR036420 -
Vra5g0335 1167 ProSiteProfiles ATP-dependent DNA ligase family profile. 330 479 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vra5g0335 1167 Gene3D BRCT domain 659 775 IPR036420 -
Vra5g0335 1167 MobiDBLite consensus disorder prediction 997 1044 - -
Vra5g0335 1167 Pfam ATP dependent DNA ligase C terminal region 466 579 IPR012309 GO:0003910|GO:0006281|GO:0006310
Vra5g0335 1167 MobiDBLite consensus disorder prediction 607 624 - -
Vra5g0335 1167 SUPERFAMILY BRCT domain 786 906 IPR036420 -
Vra5g0335 1167 Pfam DNA ligase N terminus 7 187 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vra5g0335 1167 ProSitePatterns ATP-dependent DNA ligase signature 2. 418 442 IPR016059 GO:0003909
Vra5g0335 1167 SUPERFAMILY BRCT domain 650 735 IPR036420 -
Vra5g0335 1167 MobiDBLite consensus disorder prediction 1054 1069 - -
Vra5g0335 1167 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 62 594 IPR000977 GO:0003910|GO:0005524|GO:0071897
Vra5g0335 1167 SMART BRCT_7 648 724 IPR001357 -
Vra5g0335 1167 MobiDBLite consensus disorder prediction 929 950 - -
Vra5g0335 1167 Gene3D - 445 600 IPR012340 -
Vra5g0335 1167 MobiDBLite consensus disorder prediction 1135 1149 - -
Vra5g0335 1167 ProSiteProfiles BRCT domain profile. 834 904 IPR001357 -
Vra5g0335 1167 MobiDBLite consensus disorder prediction 986 1069 - -
Vra5g0335 1167 CDD Adenylation_DNA_ligase_IV 215 447 IPR044125 GO:0005524
Vra5g0335 1167 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 251 259 IPR016059 GO:0003909
Vra5g0335 1167 Pfam BRCT domain, a BRCA1 C-terminus domain 649 731 IPR001357 -
Vra5g0335 1167 MobiDBLite consensus disorder prediction 1130 1149 - -
Vra5g0335 1167 ProSiteProfiles BRCT domain profile. 646 734 IPR001357 -
Vra5g0335 1167 Pfam DNA ligase IV 741 774 IPR021536 GO:0003910
Vra5g0335 1167 PANTHER DNA LIGASE 4 3 905 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Vra5g0335 1167 MobiDBLite consensus disorder prediction 929 946 - -
Vra5g0335 1167 CDD BRCT_DNA_ligase_IV_rpt1 650 736 - -
Vra5g0335 1167 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 186 443 - -
Vra5g0335 1167 Coils Coil 1036 1056 - -
Vra5g0335 1167 MobiDBLite consensus disorder prediction 600 627 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0335 215 596 Core DNA Replication Machinery Family AT1G08130 28.070 3.47e-29 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0335 K10777 - gmx:100816002 2037.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0335 5 3297154 3311752 Vra5g0335 5 3297154 3311752 ECH