Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0334 ATGGAGAATATTGGTGAAGAGTACAAGCATTACTGGGAGACCACCATGTTCCTCCAGACCCAAGAGCTTGACAGTAATTGGGGGTTCGAGGAGGCTTTATCAAGCTACTACGATTCCAGTTCCCCTGATGGTGCTGCTTCATCTGCAGCATCTAAGAACATTGTTTCAGAGAGGAATAGGAGGAAGAAGCTCAATGAAAGGCTTTTCGCGCTTAGATCGGTGGTTCCTAATATCAGCAAGATGGATAAGGCTTCGATTATTAAGGATGCTATTGATTACATCCAGCATTTGCACGAGCAAGAGAAGATAATCCAAGCTGAGATCATGAATCTTGAATCTGGGATGCCAAACAAGAGTGGTTCCAGCTATGACTTTGAGCAGGAACAGCTTCCTGTGGTGCTTAGGTCCAAGAAGAAGAGAACCGAGCAGATATACGATTCAGTCATTTCAAGAAACTCCCCAATTGAAGTCCTTGATCTGAGCGTGGCCTACATGGGGGAGAAAATTGCCGTGGTGAGTTTGACATGCAGCAAAAGGACAGACACAATGGTGAAACTGTGCGAGGTGTTCGAATCTTTGAAGCTCAAGATCATCACTGCTAACATCACTTCGTTTTCAGGGAGGCTTCATAAAACAGTCTTCATCGAGCCTAATGGAGAAGATAAGTATCATTTGGAGATAAAGATCCAGACAGCCATTGCAGCTCTTAACGAACCTCTGAGTCCCATGAGCATTTAA 738 0.4444 MENIGEEYKHYWETTMFLQTQELDSNWGFEEALSSYYDSSSPDGAASSAASKNIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIDYIQHLHEQEKIIQAEIMNLESGMPNKSGSSYDFEQEQLPVVLRSKKKRTEQIYDSVISRNSPIEVLDLSVAYMGEKIAVVSLTCSKRTDTMVKLCEVFESLKLKIITANITSFSGRLHKTVFIEPNGEDKYHLEIKIQTAIAALNEPLSPMSI* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0334 245 SMART finulus 54 103 IPR011598 GO:0046983
Vra5g0334 245 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
Vra5g0334 245 Pfam Helix-loop-helix DNA-binding domain 55 98 IPR011598 GO:0046983
Vra5g0334 245 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 239 - -
Vra5g0334 245 Gene3D - 44 114 IPR036638 GO:0046983
Vra5g0334 245 PANTHER TRANSCRIPTION FACTOR BHLH35 1 239 - -
Vra5g0334 245 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 49 113 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0334 Vra-Chr5 3282973 3289269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0334 1 216 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 60.092 6.82e-82 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra5g0334 HLH 2.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0334 - - gmx:100817978 395.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0334 5 3282973 3289269 Vra5g0334 5 3282973 3289269 ECH
Vra7g2533 7 45625542 45632648 Vra5g0334 5 3282973 3289269 PCT