Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0328 ATGTTATATACAAAACTCGAAGATATTTCTGTTTTGTTACCCCTCCGCCGTTGCAAGCAGCGTAACATCGAGATGGGCGAAGGGGAAGCAAAAGCGGTGGTTCCAGAATCGGTGGTGAAGAAGGAGAAAAGGAACGAGGAGTGGGCTTTGGCTAAAAAACAGCAAGTGGAAGCAGCGAAGAAAAAGAGTTCCGAAACTCGTAAATTGATTTTTAGCAGAGCCAAACAGTATGCAAAGGAATACGAGGAGCAGCAAAAGGAACTAATTAGGTTGAAGCGTGAAGCCAAGCTCAAGGGAGGGTTTTATGTTGACCCTGAAACTAAGCTTTTGTTCATCATCAGGATTCGTGGTATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTTGAGACAGATTTTTAATGGCGTCTTTCTTAAAGTGAACAAAGCAACCTTGAATATGCTGCATAGGGTAGAGCCTTATGTTACCTATGGGTATCCTAATTTGAAGAGTGTAAAAGAATTGATCTACAAGAGAGGCTTTGGAAAAGTGGACAAGCAGAGAATTGCTCTGACTGACAATTCTATTATAGAACAGACTTTGGGGAAGCATGGGATCATTTGCATAGAAGATGTGATCCACGAGATCATGACTGTTGGACCTCACTTCAAGGAGGCAAACAATTTTCTATGGCCTTTCAAGCTCAAAGCTCCCCTGGGTGGTTTGAAGAAGAAAAGAAATCATTATGTTGAAGGAGGTGACGCTGGCAACAGGGAAGATTATATAAATGAGCTCATTCGAAGGATGAATTAG 807 0.4226 MLYTKLEDISVLLPLRRCKQRNIEMGEGEAKAVVPESVVKKEKRNEEWALAKKQQVEAAKKKSSETRKLIFSRAKQYAKEYEEQQKELIRLKREAKLKGGFYVDPETKLLFIIRIRGINAMDPKTRKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGFGKVDKQRIALTDNSIIEQTLGKHGIICIEDVIHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNREDYINELIRRMN* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0328 268 ProSitePatterns Ribosomal protein L30 signature. 128 160 IPR018038 -
Vra5g0328 268 PANTHER 60S RIBOSOMAL PROTEIN L7 25 268 IPR039699 -
Vra5g0328 268 Pfam Ribosomal L30 N-terminal domain 34 105 IPR012988 -
Vra5g0328 268 CDD Ribosomal_L7_archeal_euk 109 268 IPR035808 -
Vra5g0328 268 SUPERFAMILY Ribosomal protein L30p/L7e 109 268 IPR036919 -
Vra5g0328 268 Pfam Ribosomal protein L30p/L7e 110 160 IPR016082 -
Vra5g0328 268 Gene3D - 109 213 IPR036919 -
Vra5g0328 268 Gene3D - 214 268 IPR036919 -
Vra5g0328 268 PANTHER 60S RIBOSOMAL PROTEIN L7-RELATED 25 268 - -
Vra5g0328 268 TIGRFAM uL30_euk: 60S ribosomal protein uL30 35 268 IPR005998 GO:0000463|GO:0003735|GO:0022625
Vra5g0328 268 Coils Coil 74 98 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0328 25 268 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 84.016 3.64e-157 435
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0328 K02937 - gmx:100500011 416.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0328 5 3185108 3187939 Vra5g0328 5 3185108 3187939 ECH