Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0327 ATGAGTAGTTTCCTGAACGGTGCTTCGCCGACGCGGCAAGCGATGGAGAGGGAGAGTGATATTGAGGCTGGTCCTGCCAGTCTCCGTTCCGCTGACCTCGATGATGGAGATTTATCCGATCCGTTTGATATTGCCAGAACTAAGAACGCTTCCATTGAACGCCTCAGGCGTTGGAGGCAAGCAGCGCTTGTGCTTAATGCTTCTCGTCGATTTCGTTATACCTTGGACTTGAAAAAAGAAGAAGAGAAGAGGCAAATATTGAGAAAGATTCGAGCGCATGCACAAGCCATTAGAGCAGCTTATCTTTTCAAAGCAGCTGGTGGGGTGCCAGGAAATGAACCTATTAAACCTCCTCCGACCCCAATTGCTGGTGAATTTCCAATTGGACAAGAACAACTTGCTTCAATTTCGAGGGAGCATGACACTGCTGCTCTGCAACAATATGGAGGGGTTGTAGGACTATCAATTTTGTTGAAAACCAATTTAGAGAAGGGAATTCATGGTGATGATGCTGATTTACTGAAACGTAGGAATTCATTTGGTTCCAACAATTATCCTCGGAAGAAAGGAAGAGGTTTTCTGATGTTTATGTGGGATGCTTGTAAGGACCTGACCTTGGTTATTTTAATGGTAGCTGCAGCAGCTTCACTGGCACTTGGGATAAAATCTGAGGGTATTAAGGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTGTTGTTACAGCTATAAGTGATTATAAGCAGTCTCTTCAGTTTCGAGACCTAAATGAAGAGAAGAGAAATATACACTTGGAGGTTATTAGAGGCGGTAGAAGGGTTGAGATCTCTATATATGATATTGTTGTTGGGGATGTTATACCCCTAAATATTGGTGACCAGGTCCCTGCTGATGGAATTCTTATCAGTGGTCACTCTCTTGCAATTGATGAATCAAGTATGACTGGGGAGAGCAAAATTGTCCATAAAGATTCTAAGGATCCTTTTCTGATGTCTGGATGTAAAGTTGCTGATGGCAGTGGCACAATGCTGGTTACTGGTGTTGGTATCAATACTGAATGGGGGCTTCTAATGGCTAGCATCTCAGAAGATACTGGTGAAGAAACACCATTGCAGGTTCGCTTAAATGGTGTAGCTACTTTCATTGGTATTGTTGGACTCTCCGTTGCTGTTGTTGTCTTGGTTGTGCTACTGGCTAGATATTTCTCTGGGCATACTGAAAACCCGGATGGTTCACCTCAATTTAAAGCTGGCAAGACTAAAGTTGGTGATGCTGTTGATGGTGCAATTAAGATAGTAACTGTTGCGGTCACCATCGTTGTGGTTGCAGTTCCGGAGGGGCTCCCATTAGCAGTTACTTTAACGCTGGCCTACTCGATGAGAAAAATGATGGCAGATAAAGCTTTGGTAAGGAGGCTTTCTGCCTGTGAGACCATGGGCTCTGCCACAACCATATGTAGTGATAAGACTGGCACATTGACTATGAATGAGATGACTGTGGTTGAGGCTTATGCTGGGGGTAAGAAAATTGATCCTCCCCACGAATTGAAGAATACTATGCTTTGCTCCCTGCTCATTGAGGGTGTTGCGCTGAACACTAATGGTAGTGTTTATGCACCTGAGGGTGCTAATGATGTTGAGGTTTCTGGATCACCAACGGAAAAGGCAATTTTACATTGGGGAATACAGCTTGGGATGAATTTTACGGATGCTAGATCCAAGACATCAATTATTCATGTTTTTCCATTCAATTCAGAGAAAAAGAGAGGCGGTGTTGCATTACAAACGGCCGACTCTAACATCCATATACACTGGAAAGGTGCTGCCGAGATAGTCCTAGCCTGCTGTACTGGCTATATTGATGCAAACGACCAGCTGGTGGGGATGGATGAAGAGAAGATGTCATTTTTCAAAAAGGCTATTGAAGACATGGCTGCTGATAGTCTACGTTGTGTTGCCATTGCATATAGATCATACGAAAAGGAAAAAGTTCCAACTAATGAAGAACTACTTGCTCACTGGTCTTTACCAGAGGATGATCTTATTTTACTGGCTATTGTTGGTCTTAAGGATCCTTGCCGTCCCGGTGTAAAAGATGCAGTGCTACTTTGTCAAAAGGCTGGGGTTAAGGTGAAAATGGTCACTGGTGACAATGTGAAAACTGCAAAAGCAATTGCTGTCGAATGTGGAATACTTGGTTCATTCGCTGATGCTACAGAACCAAACATCATTGAAGGAAAAACATTTCGTGGCCTGTCAGATGCAGAGAGAGATGAAATTGCTGATAGGATATCGGTAATGGGACGGTCATCTCCCAATGACAAATTATTGCTAGTACAAGCATTGAGGAGGAAAGGTCATGTTGTTGCTGTAACTGGTGATGGAACAAATGATGCTCCTGCCCTTCATGAGGCTGATATAGGTCTTGCAATGGGTATCCAAGGTACAGAAGTTGCCAAAGAGAGCTCTGATATCATTATTTTGGATGACAATTTTGCTTCAGTTGTAAAGGTTGTGAGATGGGGACGATCTGTCTATGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACAGTAAATGTGGCCGCCCTAGTGATAAATGTTGTTGCTGCAGTTTCTACTGGTGATGTTCCATTAAATGCAGTGCAGCTTCTTTGGGTAAATCTTATCATGGATACCCTGGGAGCGCTAGCCCTGGCAACGGAACCACCAACTGATCACCTCATGGATCGAACTCCTGTTGGTCGAAGAGAGCCTCTCATAACAAATATTATGTGGAGGAATTTGCTGATACAGGCAATGTACCAAGTATCTGTCTTACTTGTACTCAATTTCCGAGGTAGAAGCATACTGGGTTTGAACCATGACAACAATGTGCATGCAATCAAAGTGAAGAATACTTTGATATTTAACGCATTTGTTCTCTGTCAAATATTTAATGAATTTAATGCTCGAAAGCCAGATGAATACAACATATTTAAAGGAGTCACAAGAAACTACCTTTTTATGGGTATAATTGGATTAACTCTTGTGCTTCAGATTGTCATCATTGAATTCCTGGGCAAGTTTACAAAAACAGTAAGGCTAAATTGGAAGCAGTGGATCATCTGTGTCATTATCGGATTCATTAGTTGGCCTCTTGCTGTGATTGGGAAATTGATACCAGTGCCAACTACTCCTATCAATAACGTTTTTTCGAAATGTGGAACGTCTAAAAGGAAGGAACACGATGAATCTCAGTAG 3258 0.4245 MSSFLNGASPTRQAMERESDIEAGPASLRSADLDDGDLSDPFDIARTKNASIERLRRWRQAALVLNASRRFRYTLDLKKEEEKRQILRKIRAHAQAIRAAYLFKAAGGVPGNEPIKPPPTPIAGEFPIGQEQLASISREHDTAALQQYGGVVGLSILLKTNLEKGIHGDDADLLKRRNSFGSNNYPRKKGRGFLMFMWDACKDLTLVILMVAAAASLALGIKSEGIKEGWYDGGSIAFAVILVIVVTAISDYKQSLQFRDLNEEKRNIHLEVIRGGRRVEISIYDIVVGDVIPLNIGDQVPADGILISGHSLAIDESSMTGESKIVHKDSKDPFLMSGCKVADGSGTMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLSVAVVVLVVLLARYFSGHTENPDGSPQFKAGKTKVGDAVDGAIKIVTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTMNEMTVVEAYAGGKKIDPPHELKNTMLCSLLIEGVALNTNGSVYAPEGANDVEVSGSPTEKAILHWGIQLGMNFTDARSKTSIIHVFPFNSEKKRGGVALQTADSNIHIHWKGAAEIVLACCTGYIDANDQLVGMDEEKMSFFKKAIEDMAADSLRCVAIAYRSYEKEKVPTNEELLAHWSLPEDDLILLAIVGLKDPCRPGVKDAVLLCQKAGVKVKMVTGDNVKTAKAIAVECGILGSFADATEPNIIEGKTFRGLSDAERDEIADRISVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSTGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMDRTPVGRREPLITNIMWRNLLIQAMYQVSVLLVLNFRGRSILGLNHDNNVHAIKVKNTLIFNAFVLCQIFNEFNARKPDEYNIFKGVTRNYLFMGIIGLTLVLQIVIIEFLGKFTKTVRLNWKQWIICVIIGFISWPLAVIGKLIPVPTTPINNVFSKCGTSKRKEHDESQ* 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0327 1085 Pfam haloacid dehalogenase-like hydrolase 488 811 - -
Vra5g0327 1085 Gene3D - 172 367 - -
Vra5g0327 1085 Gene3D - 199 1051 - -
Vra5g0327 1085 SUPERFAMILY HAD-like 489 902 IPR036412 -
Vra5g0327 1085 SMART Cation_ATPase_N_a_2 150 221 IPR004014 -
Vra5g0327 1085 CDD P-type_ATPase_Ca_PMCA-like 173 930 - -
Vra5g0327 1085 Gene3D - 50 105 - -
Vra5g0327 1085 PANTHER CATION TRANSPORTING ATPASE 30 1075 - -
Vra5g0327 1085 Pfam Cation transporter/ATPase, N-terminus 151 216 IPR004014 -
Vra5g0327 1085 Gene3D - 488 842 IPR023214 -
Vra5g0327 1085 ProSitePatterns E1-E2 ATPases phosphorylation site. 493 499 IPR018303 -
Vra5g0327 1085 SUPERFAMILY Calcium ATPase, transmembrane domain M 156 1061 IPR023298 -
Vra5g0327 1085 Pfam Cation transporting ATPase, C-terminus 882 1059 IPR006068 -
Vra5g0327 1085 Pfam Ca2+-ATPase N terminal autoinhibitory domain 38 82 IPR024750 GO:0005516
Vra5g0327 1085 Gene3D - 501 697 IPR023299 GO:0000166
Vra5g0327 1085 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 497 702 IPR023299 GO:0000166
Vra5g0327 1085 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 764 877 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra5g0327 1085 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 432 514 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra5g0327 1085 PRINTS P-type cation-transporting ATPase superfamily signature 315 329 - -
Vra5g0327 1085 PRINTS P-type cation-transporting ATPase superfamily signature 491 505 - -
Vra5g0327 1085 PRINTS P-type cation-transporting ATPase superfamily signature 690 701 - -
Vra5g0327 1085 PRINTS P-type cation-transporting ATPase superfamily signature 712 722 - -
Vra5g0327 1085 PRINTS P-type cation-transporting ATPase superfamily signature 797 816 - -
Vra5g0327 1085 PRINTS P-type cation-transporting ATPase superfamily signature 821 833 - -
Vra5g0327 1085 Pfam E1-E2 ATPase 269 469 - -
Vra5g0327 1085 SFLD C1.7: P-type atpase like 473 849 - -
Vra5g0327 1085 PRINTS Sodium/potassium-transporting ATPase signature 234 254 - -
Vra5g0327 1085 PRINTS Sodium/potassium-transporting ATPase signature 484 505 - -
Vra5g0327 1085 PRINTS Sodium/potassium-transporting ATPase signature 608 626 - -
Vra5g0327 1085 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 139 1061 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vra5g0327 1085 SFLD p-type atpase 473 849 IPR044492 -
Vra5g0327 1085 PANTHER CALCIUM-TRANSPORTING ATPASE 30 1075 - -
Vra5g0327 1085 SUPERFAMILY Calcium ATPase, transduction domain A 269 364 IPR008250 -
Vra5g0327 1085 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0327 Vra-Chr5 3146410 3171490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0327 1 1068 Primary Pumps ATPases AT5G57110 75.210 0.0 1618
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0327 K01537 - gmx:100820121 1909.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0327 5 3146410 3171490 Vra5g0327 5 3146410 3171490 ECH
Vra7g2540 7 45712220 45736783 Vra5g0327 5 3146410 3171490 PCT