Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0320 ATGGCAGTGGATATGGTGGATCCTGTTCCAAGAACCAGGATGGAGGAACAATTAGCAATACAAGAAGCTGCTTCCGCTGGTTTGAAAAGCATGGAGCATCTCATTCGCCTCCTTTCTCCCTCTGCCTGCAATTCTTCTTCTTTTTCTTCTAATAACAACAACCTCGACTGCTCCCAAATCACCGACTTCACCGTCTCCAAGTTCAAACAGGTCATTAACCTTCTCAACCGCACCGGCCACGCTCGCTTCCGCCGTGCACCGCCCCAACCCCAACCCCAACCCCAGGCCCCACCGCAACCACTCCCACAACCACAACTTCAACCCCAACCTCAAACCCAACAAGGTTTCACTTTGGATTTTGTTAAACCCACCATTCTCAACTCTAAGCCCTGCAACAAAGACGAAACTCTCACTCTCTCCACAACCACCACCACCTCCTCTTCCTTTTTATCCTCCGTCACCAACGACGCCAGCGTCTCCGACGGCAAGATCGGTCCTTTCCTCCCTCCCTCCGCCGCCAAACCTCCTCTCTCCTCCTCCCACCGGAAAAAGTGCCGCGATGCCGCGCTCTCCGCCAAACCCTCCTGCCACTGCTCCAAGAAAAGGAAATCACGCGTGAAACAATCCATCAGAGTCCCGGCGATAAGTTCCAAGATCGCCGACATCCCGCCGGACGAGTACTCGTGGAGGAAGTACGGGCAAAAACCGATCAAGGGTTCACCTTTTCCTCGTGGGTACTACAAGTGCAGCACCGTCAGAGGGTGCCCGGCGAGGAAGCACGTGGAACGCGCCCAAGATGACCCGAAGATGCTGATAGTGACATACGAGGGCGAGCACCGTCACGCGCTGCCGTTGCCGGCCGCTACCGGCGGTGGTTTCGGGCTTTGA 888 0.5563 MAVDMVDPVPRTRMEEQLAIQEAASAGLKSMEHLIRLLSPSACNSSSFSSNNNNLDCSQITDFTVSKFKQVINLLNRTGHARFRRAPPQPQPQPQAPPQPLPQPQLQPQPQTQQGFTLDFVKPTILNSKPCNKDETLTLSTTTTTSSSFLSSVTNDASVSDGKIGPFLPPSAAKPPLSSSHRKKCRDAALSAKPSCHCSKKRKSRVKQSIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPFPRGYYKCSTVRGCPARKHVERAQDDPKMLIVTYEGEHRHALPLPAATGGGFGL* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0320 295 MobiDBLite consensus disorder prediction 83 112 - -
Vra5g0320 295 MobiDBLite consensus disorder prediction 87 107 - -
Vra5g0320 295 Pfam WRKY DNA -binding domain 225 281 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra5g0320 295 ProSiteProfiles WRKY domain profile. 218 284 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra5g0320 295 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 10 285 IPR044810 GO:0003700
Vra5g0320 295 SUPERFAMILY WRKY DNA-binding domain 221 284 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra5g0320 295 SMART WRKY_cls 223 283 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra5g0320 295 Pfam Plant zinc cluster domain 182 221 IPR018872 -
Vra5g0320 295 Gene3D WRKY domain 209 285 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra5g0320 295 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 10 285 - -
Vra5g0320 295 MobiDBLite consensus disorder prediction 165 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0320 Vra-Chr5 3081419 3083045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0320 6 281 WRKY Transcription Factor Family AT2G24570 52.090 6.51e-92 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vra5g0320 WRKY 2.2e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0320 - - gmx:100127391 416.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0320 5 3081419 3083045 Vra5g0320 5 3081419 3083045 ECH
Vra7g2546 7 45790389 45792325 Vra5g0320 5 3081419 3083045 PCT