Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0316 ATGGAAGATGATGAGGCATGCATCACCAGTCTTAGCCTTGGACTAGGAATGGGGAGCCGTGTCACAAAGAAGGAGAAGCAGAAACTCCCTTGTTTGGACCTAACGTTTCAGATTTCTCCAAAGGGGGAGCAAACCATTCATGTGGATAAACAACGACAACAACATCTTCTTCATGATGATAAGGCAAAAGGGTTGTTATGTTTGAAGCACCCCAGTGAAAATAACAGCCCTGATAGCAGCAACAACAACAGCAGTAACGGCAGCAGCAGAAAGAAACTGAAGCTTACGAAGGAGCAGTCAGCCACCCTTGAGGATATTTTCAAGCTGCATAGCACTCTTAACCCCGCACAAAAGCAGGCACTTGCTGATCAATTGAATTTAAAGCATAGACAGGTTGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACCAAGTTGAAGCAAACAGAGGTGGATTGCGAGTTCCTGAAGAAATGTTGTGAGAAACTAACGGATGAGAATCTGAGACTGAAGAAGGAATTGCAAGAGCTGCGTGCACAAAAGATTGGACCAAAACCATTGTACATTCAACTGTCGAAGGCTACAACCTTGAGCATTTGTTCATCGTGCCAGAAAGAATTGAAGCCCAATGAAGGGAAGAAAGGAGGCATTTCCGACGTGGTCCGAAACAGCAGCCACAAACTGCAGAACAGCGTAGGGGTAAAGGGCATTTAG 711 0.4515 MEDDEACITSLSLGLGMGSRVTKKEKQKLPCLDLTFQISPKGEQTIHVDKQRQQHLLHDDKAKGLLCLKHPSENNSPDSSNNNSSNGSSRKKLKLTKEQSATLEDIFKLHSTLNPAQKQALADQLNLKHRQVEVWFQNRRARTKLKQTEVDCEFLKKCCEKLTDENLRLKKELQELRAQKIGPKPLYIQLSKATTLSICSSCQKELKPNEGKKGGISDVVRNSSHKLQNSVGVKGI* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0316 236 Pfam Homeodomain 90 144 IPR001356 GO:0003677
Vra5g0316 236 CDD homeodomain 90 147 IPR001356 GO:0003677
Vra5g0316 236 SMART HOX_1 88 150 IPR001356 GO:0003677
Vra5g0316 236 ProSiteProfiles 'Homeobox' domain profile. 86 146 IPR001356 GO:0003677
Vra5g0316 236 Coils Coil 145 179 - -
Vra5g0316 236 Pfam Homeobox associated leucine zipper 146 179 IPR003106 GO:0006355|GO:0043565
Vra5g0316 236 SMART halz 146 189 IPR003106 GO:0006355|GO:0043565
Vra5g0316 236 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9 27 217 - -
Vra5g0316 236 SUPERFAMILY Homeodomain-like 74 147 IPR009057 -
Vra5g0316 236 MobiDBLite consensus disorder prediction 69 95 - -
Vra5g0316 236 MobiDBLite consensus disorder prediction 72 90 - -
Vra5g0316 236 ProSitePatterns 'Homeobox' domain signature. 121 144 IPR017970 GO:0000981|GO:0006355
Vra5g0316 236 Gene3D - 67 145 - -
Vra5g0316 236 PANTHER - 27 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0316 Vra-Chr5 3031953 3033710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0316 88 204 Homeobox Transcription Factor Family AT4G37790 73.504 1.82e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vra5g0316 Homeodomain 1.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0316 K09338 - gmx:100790522 341.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2551 7 45849746 45851136 Vra5g0316 5 3031953 3033710 PCT