Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0315 ATGTCTCCCCGAACACTCCAAGAAGCTTCACTCTCTAATATGACACAGACACCACACCACAAATATGGAGGAACATTCTTTTACATCCTCGGAGGAATTGTTGTGCTGGTCATAGTGTTGATTTTTTTTTATGTACTTCGGAAGCGTCTAAAATGGTCACCACAGAATATGACAAAACAGCAAGAGATTGGGAAACACACAGAATCAGCAGATATAATGCAGATGATATTTTCATCTAATCAACAGTCAGGGTCCAAGGAGCTCTGTAGTGGAAACTTTAGGACAATTAACTGCTTTGACTACCAAACATTGAAGAATGCAACCATGAATTTCCATGCAGATAATTTTCTTGGAAGTGGTGGATTTGGACCTGTTTACAAGGGAAAGTTGGCAGATGGAAGGGTGGTTGCCGTTAAGAAATTGTCTCTCAACAAATCTCAACAGGGAGAAAAAGAATTTCTGGTAGAGGTGAGAACAATTACTAGTATCCAACACAAAAATCTGGTTCGTCTTCTTGGATGCTGCGTAGATGGACCACAAAGGATACTTGTCTATGAATACATGAAAAACAGAAGTTTGGACCTCTTTATTCATGAAAACAGTGATCAATTTCTGAATTGGAGAACTAGATTCCAAATTATTCTGGGAGTAGCCAGAGGACTACAATATCTTCATGAGGATTCACAACAAAGAATTGTTCATAGAGACATCAAAGCAAGTAACATTCTTCTTGATGACAAGTTTCAGCCAAGGATTGGGGACTTTGGGCTAGCTAGATTTTTCCCGGAAGATCAAGCTTACCTTAGCACACAGTTCGCTGGAACACTAGGTTATACTGCTCCTGAATATGCCATTAGAGGAGAATTATCTGAAAAGGCAGATATCTATAGTTTTGGAGTTCTCCTGCTTGAAATAATCTGTTGCAGGAAAAACACAGACCACACTTTGCCATCAGATATGCAGTACCTCCCTGAATATGCATGGAAACTATACGAGAATGCAAAGATATTAGAAATTGTAGATCCGAAACTGCAAGAACATGGATTGGTAGAAAAGGATGTTATGCAAGCAATCCACGTGGCTTTCTTATGTCTGCAGCCTGATGCACATTTGAGACCTCCCATGTCAGAGATCGTGGCATTGTTGACATTCAAAATTGAAATGGTGACAACACCAATGAGGCCAGCATTTCTGTATCGAAGAGCAAAAAAGGATGATGAGAAACAACATTTAGGAGCAATATATCAGGATTTAACATCTCCCATATAA 1269 0.394 MSPRTLQEASLSNMTQTPHHKYGGTFFYILGGIVVLVIVLIFFYVLRKRLKWSPQNMTKQQEIGKHTESADIMQMIFSSNQQSGSKELCSGNFRTINCFDYQTLKNATMNFHADNFLGSGGFGPVYKGKLADGRVVAVKKLSLNKSQQGEKEFLVEVRTITSIQHKNLVRLLGCCVDGPQRILVYEYMKNRSLDLFIHENSDQFLNWRTRFQIILGVARGLQYLHEDSQQRIVHRDIKASNILLDDKFQPRIGDFGLARFFPEDQAYLSTQFAGTLGYTAPEYAIRGELSEKADIYSFGVLLLEIICCRKNTDHTLPSDMQYLPEYAWKLYENAKILEIVDPKLQEHGLVEKDVMQAIHVAFLCLQPDAHLRPPMSEIVALLTFKIEMVTTPMRPAFLYRRAKKDDEKQHLGAIYQDLTSPI* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0315 422 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 90 396 - -
Vra5g0315 422 Gene3D Phosphorylase Kinase; domain 1 80 187 - -
Vra5g0315 422 CDD STKc_IRAK 117 383 - -
Vra5g0315 422 Gene3D Transferase(Phosphotransferase) domain 1 188 391 - -
Vra5g0315 422 SUPERFAMILY Protein kinase-like (PK-like) 92 385 IPR011009 -
Vra5g0315 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Vra5g0315 422 SMART serkin_6 111 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0315 422 Pfam Protein tyrosine and serine/threonine kinase 114 381 IPR001245 GO:0004672|GO:0006468
Vra5g0315 422 ProSiteProfiles Protein kinase domain profile. 111 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0315 422 PANTHER RECEPTOR-LIKE KINASE 90 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0315 Vra-Chr5 3018507 3022113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0315 99 398 Receptor kinase-like Gene Family AT1G56120 49.667 1.17e-100 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra5g0315 PK_Tyr_Ser-Thr 5.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0315 - - gmx:100799624 684.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2553 7 45869323 45872450 Vra5g0315 5 3018507 3022113 PCT