Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0312 ATGCATGAACCAATGATACCAACTTATCGTTATTCAGTGGTGTCTTCTCCTATGTCTATAGATCTCAATGAAGATCATACACACACTCTCTTCAGTACAATTCATCAAGTTTCTTCTTCATCTTCTTCTTTATCTACTTCTATTCTCTTCAACCCAGATCAGGCTCAAGGAGGATTTTGCTATTGTGAATCAAAACATCTTCAAGAGGCCCAGAAGATTGTCTGTTTCGGTGGATCATGTGATCATCAAGCAGAAAAGATTGAAAAGAGAAGTGATCTCGAGCTTAGACTTTGGGAGAAAGAAGAGTGTGATAATCTTCAAGGCGAAGACAGTTCAACTAACTGGATGCCTCCAAAGATGAGAATGGTGCGGAAAATTATGGTTTCAGATCAAACAGGTTCTCATAAGGCAGATATCTCTAACTCTAAGCAGATGAAGGCTAAAGAGAAAAACCCAACACTGTCACAGCTGGTAACTGATGATAGTAACTATAACTCTTCTTCAAACAACAACAGTGTCACTGCTAGGGTTTGTGCTGATTGCCACACCACTAAGACCCCTCTCTGGAGGACTGGACCAACAGGTCCTAAGTCTCTTTGCAATGCTTGTGGAATTCGACAAAGGAAGGCTAGACGCGCCATTGCTGCAGCTGCAACAACAGCAAAGGGAACAAACAGGTTGGAGGCTAAGAAATCTGAAGTGAAGAAGGGGAAAAAATTGCATAGCAAAGGGAAAAAGCCCAAAACTGGGAGTGCACCAGTGCTGGTGAAAAAGAAGCGTAAACCTGCCAAGCATAGAAAGAAGTTCAGTGCTTTTGAGGATTTGTCAGTAAGATTCCAACAAGTTTTCCCTCAGGATGAGAAAGAAGCTGCAATCTTGCTCATGGCTTTATCTCATGGACTACTTCATGGCTTCCCCTCAGATCGCTACATCTCTTAG 939 0.4217 MHEPMIPTYRYSVVSSPMSIDLNEDHTHTLFSTIHQVSSSSSSLSTSILFNPDQAQGGFCYCESKHLQEAQKIVCFGGSCDHQAEKIEKRSDLELRLWEKEECDNLQGEDSSTNWMPPKMRMVRKIMVSDQTGSHKADISNSKQMKAKEKNPTLSQLVTDDSNYNSSSNNNSVTARVCADCHTTKTPLWRTGPTGPKSLCNACGIRQRKARRAIAAAATTAKGTNRLEAKKSEVKKGKKLHSKGKKPKTGSAPVLVKKKRKPAKHRKKFSAFEDLSVRFQQVFPQDEKEAAILLMALSHGLLHGFPSDRYIS* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0312 312 ProSitePatterns GATA-type zinc finger domain. 178 203 IPR000679 GO:0006355|GO:0043565
Vra5g0312 312 ProSiteProfiles GATA-type zinc finger domain profile. 172 208 IPR000679 GO:0006355|GO:0043565
Vra5g0312 312 MobiDBLite consensus disorder prediction 133 152 - -
Vra5g0312 312 Pfam GATA zinc finger 178 211 IPR000679 GO:0006355|GO:0043565
Vra5g0312 312 MobiDBLite consensus disorder prediction 236 266 - -
Vra5g0312 312 CDD ZnF_GATA 177 207 IPR000679 GO:0006355|GO:0043565
Vra5g0312 312 SMART GATA_3 172 223 IPR000679 GO:0006355|GO:0043565
Vra5g0312 312 Gene3D - 172 218 IPR013088 GO:0006355|GO:0008270
Vra5g0312 312 MobiDBLite consensus disorder prediction 226 266 - -
Vra5g0312 312 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 175 213 - -
Vra5g0312 312 MobiDBLite consensus disorder prediction 132 152 - -
Vra5g0312 312 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 5 304 - -
Vra5g0312 312 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 5 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0312 Vra-Chr5 2994934 2997088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0312 111 304 C2C2-Gata Transcription Factor Family AT4G26150 37.900 1.01e-27 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vra5g0312 GATA 2.5e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0312 - - vun:114162648 481.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0312 5 2994934 2997088 Vra5g0312 5 2994934 2997088 ECH
Vra7g2560 7 45911224 45916066 Vra5g0312 5 2994934 2997088 PCT