Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0308 ATGGGGGTGATCTTGGCTCTGATTCTGCAGCTGTTGAAGCTCTGCGTCATTGGCTTTGTTGTGGCATTCCAAGGATCTCAAGGGTCTATTATATCCCCATCTCCAGCATTCCTTCCAGTCATTCATCCTAGTAGAGAAGCACCTGCTCCTATCCTTCTTGGACTGCCATGGGGAAGCAGTCCACCAAGATCACCTTCAGATCCTAATGGGTTTGTTATATCCCCATCTCCAAAAACCATACATGTGAATCCTTCCCCAAGTGAAGCACCTGGTTTTATACACCCAAAAGAACCATGGAGAACCATTGCACCAAGCCTTCAAGAAGTACCAAATGGGCCATTTTTTTTACCACCTCCTAAATCAGCTCCAACTCCCGAGAAGACAAGAGATTCTGAACCATCCATATCTCCTAGTCCTGGTGCAAGCACCATAACATCAACATCACCACCGTATAATGGTGCTCTTGGACCATCAACTGCAGAAGGGAACGTTTCGCCATCCATACAACTAAGTCCACCTCAAAGCAAAACACCTGCTTTTAGTCCTCCTGTTTTCACACCAATTGCTCCAGCTCCCATTGCAGTACCTTCAGGGAATTTGACAAAAACTTCACCAGTCAGCCAACCAACTGAACGTGGAAGTTCGCCTCCTAAGACTGATGAGAGGAACAAGAGTCACAAGCCTGAGCCAGCTTTTCCAGCCGTAGTTCCAATACCTTCTACACAGTTGCCCAAATATTCACCAGTAAGCCAGCCAAATGAAAATGGAAGTTTGCCTCATAGAGATGGTGCAAATAATGGTCACGTCCCCGAGCCAATTTCACCAGCCCCTTTAGTATTCAGTTTTCCTGAACATCCACCAGTGAGTCAGCCAACTGAACATGGAAGTTGGCCTCCAACTGTTCCCAGAGGTCACACATTGGAGCCAGTTTCACACGCCCCAGTTGCACAACCTCCTACAAATTTGCCAAAAAATTCGTCTGCTAGTCAACCAACTCTTGGAAATTCCCCCCCTGATCTTCACAATGGAACTGCAAATAATGGTCACACTCACACCCCAGCACAAAAAATGTCACCATCAGTTACACCATCAAGTCCATTTCCAGTAGATCCACCATTAGTCCACCCAGTCATACCAGCAGCTTCTCCATCCAAATCACCAGCACCTATTGTCTCTCCTGCATTGACTCCTTCCAGAAGCTTTAGTTGGAAAAAAGGTGGAGAACCAGTTTCTGCACCAGTGTACAAAGCACCAAAGCCACTACCGGCTATAGTACATTCCCATACTCAAGCACCTGTTGTCTCTCCAGCATTAACACCTTCTAGAAGCTTCAATTGGAAAAGAGGTGGAGAACCGGTTTCTGCTCCTGCATACAAAACACCAAAGCCACTACCCGCTATAGTACATTCCCCTACTCAAGCAAGGCAATTTCACTATGCTCCTGAACCATCTCCTAACAAAGATTACCCTCCTGCATCTTCACCTTCAACCACATTCTATAAGCATCACCACACAAGAAACACAATCAGAAGCCCTGCTCCTGCATCATCGTATTCAGTTTCTCCTTCCACTTTAAAACACCAAGATGAACCAATTCCTCCCTCACGGTTGCCAGCAAGTCGGCAAAGACAACATGCTGCGTCACCATTGAACACAGTAGGTTCAACAGTTTCCCCGTTTCAGTCACCAGTAAGCCAGATTTCACCAGCTCCTTCTCCATCCTTCAAAATACTCCCTCATTCAACCAAAATTCCAATTCATCCTCCCGAGGTATCTCCTTTTCGGCCTTCTTCCAAGAGCCCTAAGAAGCCTCGGAATCAAGCACTACCACCGCCACCTCCCAATGAAGATTGTATATCACTGGTTTGCTCTGATCCTTATACAAGTACTCCACCTGGTGCACCTTGCAAATGTGTGTGGCCCATGAAAGTCGGTCTTCGCCTTAGTGTTTCTTTGTATACTTTCTTCCCTTTGGTTTCGGAGTTTGCTTCTGAAATTGCCATTGGAGTTTTCATGAAGCAAAGTCAAGTTCGCATTATGGGAGCTGATGCAGCAAACCTGCAACCTGATAAAACTATTGTATTCATTGATTTGGTACCACTTGGGGAAAATTTTGATAACACTACAGCCTTTTTTACTTCTGAGAGATTTTGGCATAAACAGGTTGCTATAAAGACTTCTTACTTTGGTGATTATGACGTATTATATGTGAGCTATCCAGGTTTGCCTCCATCTCCTCCTTTACCTCCTTCAAGCATTACAATTGTTGATGGCGGTCCATATTCTGGCAGTGGCAATAACAGTAGGACCATAAAGCCCCTTGGGGTTGACATATCAAAGAGGCAGCATAAAGGTGGAATTAGCAAGGGCATGATTGCTGTTATTTCTCTCTCAGTTTTTCTAGTAGTTGTTTTATGCTTTGCTGCTGCTTGGGCCTTGTTCAAGTTCAGAGATCATTCAAGTAAACTGGCATCAACCCCACATGTTCTGTCTCCTCCACTTACCAAAGCTCCAGGTGCTGCTGGATCAGCAGTTGCAGGCAGGCTTGCTTCAGCTTCAACATCATTCCGGTCTAGCATTGCTGCTTATGCAGGATCTGCTAAGACTTTCAGCATGAATGACATTGAGAAAGCCACAGATAATTTCCATGACTCCAGAGTACTTGGAGAAGGTGGATTTGGGCGTGTTTATAGTGGTGTACTTGAAGATGGGACAAAAGTGGCAGTCAAGGTTCTGAAAAGAGAGGATCATCATGGTGACCGTGAATTCCTGTCTGAAGTAGAGATGCTTAGCCGGCTTCACCATAGAAACTTGGTTAAATTGATTGGTATTTGCGCAGAGGTCAGCTTCCGGTGCTTGGTTTATGAACTCATTCCAAATGGCAGTGTGGAATCCCATTTACATGGGATGGACAAGGAAAGCAGCCCCCTTGATTGGAGTGCTCGGATAAAGATAGCACTTGGCGCTGCTCGTGGACTGGCTTATCTGCATGAAGATTCAAGTCCTCATGTCATACATAGGGACTTCAAGTCTAGTAATATCTTGCTGGAAGATGATTTTACTCCAAAAGTATCTGATTTTGGATTAGCCCGAACAGCAGCTGATGAGGAGAACAGACACATATCAACACGTGTAATGGGAACTTTTGGTTATGTGGCTCCGGAGTATGCAATGACCGGCCACCTTCTTGTGAAAAGTGATGTTTACAGCTACGGTGTTGTCCTCCTTGAGCTCTTGACAGGAAGAAAACCAGTAGACATGTCACGACCGCCCGGTCAAGAGAATCTCGTTGCATGGGCTCGTCCATTGCTCTCGAGCGAAGAAGGAGTGGAAGCAATAACAGATCCATCTCTGGGACCTGACGTGCCTTCTGATAGTGTGGCTAAAGTTGCAGCCATTGCTTCTATGTGTGTACAACCAGAGGTTTCAGACCGTCCTTTTATGGGTGAGGTAGTTCAGGCTTTAAAACTAGTGTGCAATGAATGTGATGAGGCAAGAGAAACAGGCTCAAGTTCTACCTCAGTTGATTTCAGTCATTCTAGACAAGTGTCAGATAATTTTCAAGGGCAATCCTCAGCCACCAATTATGATTCTGGAGTTGATATTGAAAATGGGCTGTTGGCATCAGAGTTATTCAGCTCATCATCCGCAAGATATGGAAAACGAGTGTCAGGATCATTTAGAAGGCATTCTTATTCAGGTCCTCTTAGTACTGGAAGAAGCAAACGGTTATGGCAGATAATTAGAAAGCTTTCTGGCGGTAGTGTCAGTGAACATGGAACTATGTTCAAGTTATGA 3798 0.4518 MGVILALILQLLKLCVIGFVVAFQGSQGSIISPSPAFLPVIHPSREAPAPILLGLPWGSSPPRSPSDPNGFVISPSPKTIHVNPSPSEAPGFIHPKEPWRTIAPSLQEVPNGPFFLPPPKSAPTPEKTRDSEPSISPSPGASTITSTSPPYNGALGPSTAEGNVSPSIQLSPPQSKTPAFSPPVFTPIAPAPIAVPSGNLTKTSPVSQPTERGSSPPKTDERNKSHKPEPAFPAVVPIPSTQLPKYSPVSQPNENGSLPHRDGANNGHVPEPISPAPLVFSFPEHPPVSQPTEHGSWPPTVPRGHTLEPVSHAPVAQPPTNLPKNSSASQPTLGNSPPDLHNGTANNGHTHTPAQKMSPSVTPSSPFPVDPPLVHPVIPAASPSKSPAPIVSPALTPSRSFSWKKGGEPVSAPVYKAPKPLPAIVHSHTQAPVVSPALTPSRSFNWKRGGEPVSAPAYKTPKPLPAIVHSPTQARQFHYAPEPSPNKDYPPASSPSTTFYKHHHTRNTIRSPAPASSYSVSPSTLKHQDEPIPPSRLPASRQRQHAASPLNTVGSTVSPFQSPVSQISPAPSPSFKILPHSTKIPIHPPEVSPFRPSSKSPKKPRNQALPPPPPNEDCISLVCSDPYTSTPPGAPCKCVWPMKVGLRLSVSLYTFFPLVSEFASEIAIGVFMKQSQVRIMGADAANLQPDKTIVFIDLVPLGENFDNTTAFFTSERFWHKQVAIKTSYFGDYDVLYVSYPGLPPSPPLPPSSITIVDGGPYSGSGNNSRTIKPLGVDISKRQHKGGISKGMIAVISLSVFLVVVLCFAAAWALFKFRDHSSKLASTPHVLSPPLTKAPGAAGSAVAGRLASASTSFRSSIAAYAGSAKTFSMNDIEKATDNFHDSRVLGEGGFGRVYSGVLEDGTKVAVKVLKREDHHGDREFLSEVEMLSRLHHRNLVKLIGICAEVSFRCLVYELIPNGSVESHLHGMDKESSPLDWSARIKIALGAARGLAYLHEDSSPHVIHRDFKSSNILLEDDFTPKVSDFGLARTAADEENRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSRPPGQENLVAWARPLLSSEEGVEAITDPSLGPDVPSDSVAKVAAIASMCVQPEVSDRPFMGEVVQALKLVCNECDEARETGSSSTSVDFSHSRQVSDNFQGQSSATNYDSGVDIENGLLASELFSSSSARYGKRVSGSFRRHSYSGPLSTGRSKRLWQIIRKLSGGSVSEHGTMFKL* 1266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0308 1265 MobiDBLite consensus disorder prediction 243 260 - -
Vra5g0308 1265 CDD STKc_IRAK 888 1156 - -
Vra5g0308 1265 MobiDBLite consensus disorder prediction 176 190 - -
Vra5g0308 1265 Gene3D Phosphorylase Kinase; domain 1 854 957 - -
Vra5g0308 1265 MobiDBLite consensus disorder prediction 509 528 - -
Vra5g0308 1265 MobiDBLite consensus disorder prediction 128 175 - -
Vra5g0308 1265 ProSiteProfiles Protein kinase domain profile. 882 1158 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0308 1265 PANTHER OS01G0750732 PROTEIN 414 1265 - -
Vra5g0308 1265 MobiDBLite consensus disorder prediction 107 407 - -
Vra5g0308 1265 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 414 1265 - -
Vra5g0308 1265 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1004 1016 IPR008271 GO:0004672|GO:0006468
Vra5g0308 1265 SUPERFAMILY Protein kinase-like (PK-like) 863 1155 IPR011009 -
Vra5g0308 1265 MobiDBLite consensus disorder prediction 477 615 - -
Vra5g0308 1265 ProSitePatterns Protein kinases ATP-binding region signature. 888 910 IPR017441 GO:0005524
Vra5g0308 1265 Gene3D Transferase(Phosphotransferase) domain 1 958 1184 - -
Vra5g0308 1265 MobiDBLite consensus disorder prediction 541 572 - -
Vra5g0308 1265 MobiDBLite consensus disorder prediction 364 378 - -
Vra5g0308 1265 MobiDBLite consensus disorder prediction 318 363 - -
Vra5g0308 1265 MobiDBLite consensus disorder prediction 197 214 - -
Vra5g0308 1265 Pfam Protein tyrosine and serine/threonine kinase 885 1155 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0308 Vra-Chr5 2926070 2936266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0308 286 1261 Receptor kinase-like Gene Family AT5G56890 52.376 0.0 870
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vra5g0308 PK_Tyr_Ser-Thr 5.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0308 - - gmx:100802309 2012.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0308 5 2926070 2936266 Vra5g0308 5 2926070 2936266 ECH