Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0303 ATGCACCCCATGGAAAATGTCTTCTCTCTTCCTGTAGCCGCCAGGGCTGATTTTATCCAATTTCTGTTGCAGTCTTTTGGATGCAGTTACATCTGTCTGTGGGCATTCGATTCCATTTCACCCAATCGTTTGTGCTTCTTGGATGGTATCTACAATGTAAGAAACGACCAACCAGGCTCTAGTTTGGGGACAGTGGCACAACAACTTTTCAGACAGTTCAGGACTTTAACATTTGATGTTAATGATGACCGTGTTCCTGGACTAGCTTTTAGGAACCAGCGTCCCTACCTAGAGTTGCAACGATTGGAACTTCTCAGACTTGCATCAACAGAAATACAAACACAATTCTTTCAGGAGGCGAGGATTAAGAGTGCTGTTTTCATGGGGTGTAACAAAGGAGAAATTGAGCTTGGTTTCTTAAATATGTCCCAAGTTGACATTCAAACAGCACTTAGGAGTTTGTTTCCTGGAGAATTTTCAATGGGACAGTCCCAGCAAATTGATCAAAACCCTCCTACATCATCTTCATCTTCTTTGAGATCAATATCTACAGGTAGCCCTGAATACTCATCTCTTCTGTTCAGTATTCCAGGCACTTCTCAATCCCACTTCCCTGAGACACTTGGAGGAGCAAGAGTGTCCCCAATGCAGCCAGTGCCAAACACAGCCACTGGTCCTCACCAGCAAGCCATTCAAGCACTTGCACAAGCCCCTCTAACCCAATTCCCCACACCAGAAATTGAACATGATGCAATCATGAGAGCAATCCTACATGTTATATCTCCAACTTCTCATCAGCACCAAAACTTGCCCTTTACTCCAGTTGTTCATCCAGATGCCAGTGCTTTCCAGAGGTACAGATCAGACATTGGTCCTAATATGGCTTCCAATATCAGAAAGCAAAGCTTCATGAAGAGATCTTTTGCATTCTTTAGAAACTTAAATTTTATGAGAATGAGAGAACGCATTCAAGCAACGTCCCGTCCCACTAATACCCAGCTGCATCATATGATATCAGAGAGAAGAAGGCGTGAGAAACTAAACGAGAATTTCCAAGCACTTAGAGCATTACTTCCACCGGGAACAAAGAAAGATAAAGCGTCTATACTAATAGCAGCAAAGGAAACATTGAGCTATCTAATGGCTGAAGTTGATCAACTAAGCAAAAGGAATCAGGGTTTGCAATCACTTTTGCCATCCAAAGAACCTACAACTGAAGAAATCAAGGCTAGATTATCTCCAAATGAAAGATTAAGTGTCCGAGTTTCACATCTACCCGAATCAAGCTCGTCACAGGAGCGAATGGTGGACTTGCAAGTGAATGTGAGAGGACAACTTTCTCAAATTGATTTGTCAATCTGCTTATTGGAATTCCTAAAACAGTGTCTCAACGTGAGCTTGGTTTCCATGGACGCAAACACCCACATTGCAGAAGGGAATAACGCAATTCATCAACTAACCTTCAGATTAAGGATTATTCAGGGAAGTGATTGGGACGAGTGTACCTTCGAGGAAGCAGTGAGAAGAGTGGTTGCTGACTTGGCACAGTACAAAGAGGACCAATAA 1566 0.4278 MHPMENVFSLPVAARADFIQFLLQSFGCSYICLWAFDSISPNRLCFLDGIYNVRNDQPGSSLGTVAQQLFRQFRTLTFDVNDDRVPGLAFRNQRPYLELQRLELLRLASTEIQTQFFQEARIKSAVFMGCNKGEIELGFLNMSQVDIQTALRSLFPGEFSMGQSQQIDQNPPTSSSSSLRSISTGSPEYSSLLFSIPGTSQSHFPETLGGARVSPMQPVPNTATGPHQQAIQALAQAPLTQFPTPEIEHDAIMRAILHVISPTSHQHQNLPFTPVVHPDASAFQRYRSDIGPNMASNIRKQSFMKRSFAFFRNLNFMRMRERIQATSRPTNTQLHHMISERRRREKLNENFQALRALLPPGTKKDKASILIAAKETLSYLMAEVDQLSKRNQGLQSLLPSKEPTTEEIKARLSPNERLSVRVSHLPESSSSQERMVDLQVNVRGQLSQIDLSICLLEFLKQCLNVSLVSMDANTHIAEGNNAIHQLTFRLRIIQGSDWDECTFEEAVRRVVADLAQYKEDQ* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0303 521 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 328 397 IPR036638 GO:0046983
Vra5g0303 521 Pfam Helix-loop-helix DNA-binding domain 335 380 IPR011598 GO:0046983
Vra5g0303 521 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 4 514 - -
Vra5g0303 521 Coils Coil 337 357 - -
Vra5g0303 521 SMART finulus 337 386 IPR011598 GO:0046983
Vra5g0303 521 MobiDBLite consensus disorder prediction 161 184 - -
Vra5g0303 521 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 331 380 IPR011598 GO:0046983
Vra5g0303 521 Gene3D - 330 404 IPR036638 GO:0046983
Vra5g0303 521 CDD bHLH_AtbHLH_like 336 388 IPR045239 -
Vra5g0303 521 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 4 514 IPR044658 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0303 Vra-Chr5 2853544 2857808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0303 14 516 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 40.935 2.25e-97 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra5g0303 HLH 3.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0303 - - gmx:100807098 807.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0303 5 2853544 2857808 Vra5g0303 5 2853544 2857808 ECH
Vra7g2574 7 46047827 46050061 Vra5g0303 5 2853544 2857808 PCT