Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0298 ATGGATGTTTCCGAGAGCGAGTTCCTTCAGAAAGTGAAAGCAAAGGAACAAAACAAGGTTGGTTTTGAAAACGTCATCGTTTTGATGAAGGAAGAAGATGATGATGATGTTGAGTGGGGTCCACAACCGTTCGTGAAGAAGATATTGAAAATGGTGGAAGATGAGAGCTTGAAGCGAATTGTGTCGTGGGGTGAAGGGCGTTGCAGTTTCGTGGTTTGGAATTCTGCTAAGTTCAGCAAAACCATTCTTCCAAACTACTTCAAGCACAGTAACTTCTCTAGCTTCCTTCGCCAACTTAACAACTATGGGTTTAAGAAGGTTAATCCAAAGCGTTGGGAGTTTGCATGTGAAGGTTTTCAACCAGGAAAAAGGCATTTACTGAAGAATATCGTGAGAAGAGGAAGAAAGAACAAGTTTCAAGGTGAAGTTGATGAGCTGAAGAAGGAGAAGAACGTGTTAGCAGTGGAGATTCTGAAGCTCACACAACGGCTTAAGGATTCACAGGTTCAACTTAACAATTTTGAAGAACGGCTTCGGTATGTTGAGTTGAAGCAATATCAGATGTTGGATTTGTTCAGCAGAATGGTCAAGAGATGCAAATTGTTGGGACCTCAGTACTATTTGAGTTTCTCTAATAAGGGCACAAACACTAGCTCAAACTTTGGTTATTATAGACAGCAAGGTTGTGAACAAAATGGTATCTTGTCAGAGACTGTGAAAGATGATTCATACATATCTACACATGGTTATGATGTGTCACATGCTTATGATGGTGTGTTAGAAGAATTACTAAGTGAGAATTTTGATGAGGATGTAAATGTAAGTGTGAATGAGTCAAATATATATCTTGAGTTGGAGAGTTTGATTGGATCCACAAATGGATTGGTGGGGTGA 894 0.3971 MDVSESEFLQKVKAKEQNKVGFENVIVLMKEEDDDDVEWGPQPFVKKILKMVEDESLKRIVSWGEGRCSFVVWNSAKFSKTILPNYFKHSNFSSFLRQLNNYGFKKVNPKRWEFACEGFQPGKRHLLKNIVRRGRKNKFQGEVDELKKEKNVLAVEILKLTQRLKDSQVQLNNFEERLRYVELKQYQMLDLFSRMVKRCKLLGPQYYLSFSNKGTNTSSNFGYYRQQGCEQNGILSETVKDDSYISTHGYDVSHAYDGVLEELLSENFDEDVNVSVNESNIYLELESLIGSTNGLVG* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0298 297 Pfam HSF-type DNA-binding 44 133 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra5g0298 297 Gene3D - 37 134 IPR036388 -
Vra5g0298 297 ProSitePatterns HSF-type DNA-binding domain signature. 83 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra5g0298 297 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-9 23 202 - -
Vra5g0298 297 SMART hsfneu3 40 133 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra5g0298 297 PRINTS Heat shock factor (HSF) domain signature 44 67 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra5g0298 297 PRINTS Heat shock factor (HSF) domain signature 82 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra5g0298 297 PRINTS Heat shock factor (HSF) domain signature 95 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra5g0298 297 Coils Coil 136 184 - -
Vra5g0298 297 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 23 202 IPR027725 -
Vra5g0298 297 SUPERFAMILY "Winged helix" DNA-binding domain 40 133 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0298 Vra-Chr5 2825034 2826006 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0298 38 291 HSF AT2G26150 36.332 2.93e-52 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vra5g0298 HSF_DNA-bind 5.5e-29 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0298 K09419 - gmx:100818430 223.787