Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0295 ATGGAACCTCGCGTTGGGAATAAGTTTCGGCTTGGTCGTAAGATCGGTAGCGGATCGTTTGGAGAGATCTATTTAGGTACTAACATTCAAAATAATGAAGAGGTTGCAGTTAAGCTTGAAAATGTCAAGACAAAGCATCCTCAGTTGCTATATGAATCCAAGTTGTACAGAGTTCTCCAGGGAGGAACTGGAATTCCTGATATTAGATGGTTTGGAGTTGAGGGAGATTACAATGTTCTAGTGATGGATCTTCTTGGACCTAGTCTTGAAGATCTATTTAACTTTTGCAGTAGAAAGCTCTCGCTAAAGACCGTTCTCATGCTTTCTGATCAAATGATCAACCGTGTTGAGTTTGTTCATTGTAAATCTTTTCTACATCGGGATATCAAACCAGATAATTTTCTTATGGGATTGGGAAGGCGGGCAAACCAGGTTTACTGTATTGATTTTGGTTTGGCCAAAAAATATAGGGATAGTTCAACCCATCAACACATTCCATACAGAGAAAATAAGAATTTAACTGGGACTGCTAGATATGCAAGTATGAATACCCACCTTGGCATTGAGCAGAGTCGAAGAGATGATTTGGAGTCTCTTGGTTATGTCTTGATGTATTTCCTGAGGGGAAGTCTCCCTTGGCAAGGACTTAAAGCGGGAACCAAGAAACAGAAATACGAGAGAATCAGTGAAAAAAAGGTTTCTACCTCTATTGAGGCATTGTGTCGAGGTTATCCAACAGAGTTTGCATCATACTTCCATTACTGCCGCTCATTAAGGTTTGATGATAGGCCAGATTATGCTTACCTCAAGAGAATATTTCGTGACCTGTTTATTCGTGAAGGATTCCAGTTTGATTATGTGTTTGATTGGACAATTTTGAAGTATCAGCAATCACAGCTAGCCGCACCTCCTGCACGTGCTGTTGGTCCTGCTGCTGGAACTAGTTCTGCAATGCCACCAGCTGTGACTAATGCTGATAGACAAACAGGAGAGGAAGACGGACGACCCCCTGGTCTGATTTCAGGGGATTCCACAAGGAGAAGAATGTCAAGCACCATCTCAAACACTGTAAATATTTCAAGACAGAAAAATCCTGTCACCGTGGATGCTGCTCTTAATAAGGAAGCTATGTTATCAAAGCCCAATGTCTTGGGTCAGTCAAGTGGATCAAGGCGAGCGGCTGTTTCCAGTAGCCGAGATGCATTTGCTGGTAGTGATTTGGATTCTCGTACTCGTACTACTGAGGTTAACCCTGGAATGCGCAAAATAACATCTGGGAGAAATGCATCTTCTCATGTCAAGAACTATGAAAGTGCTGTCAAGGGCATTGAAGGTTTGCAATTGGAAAATGACAAGAGGGCACATTATTAA 1371 0.4194 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQNNEEVAVKLENVKTKHPQLLYESKLYRVLQGGTGIPDIRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLSDQMINRVEFVHCKSFLHRDIKPDNFLMGLGRRANQVYCIDFGLAKKYRDSSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYERISEKKVSTSIEALCRGYPTEFASYFHYCRSLRFDDRPDYAYLKRIFRDLFIREGFQFDYVFDWTILKYQQSQLAAPPARAVGPAAGTSSAMPPAVTNADRQTGEEDGRPPGLISGDSTRRRMSSTISNTVNISRQKNPVTVDAALNKEAMLSKPNVLGQSSGSRRAAVSSSRDAFAGSDLDSRTRTTEVNPGMRKITSGRNASSHVKNYESAVKGIEGLQLENDKRAHY* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0295 456 Gene3D Transferase(Phosphotransferase) domain 1 1 318 - -
Vra5g0295 456 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Vra5g0295 456 PANTHER CASEIN KINASE-RELATED 1 438 - -
Vra5g0295 456 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Vra5g0295 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vra5g0295 456 MobiDBLite consensus disorder prediction 344 358 - -
Vra5g0295 456 MobiDBLite consensus disorder prediction 382 434 - -
Vra5g0295 456 PANTHER CASEIN KINASE 1-LIKE PROTEIN 2 1 438 IPR030509 GO:0004672|GO:0005524
Vra5g0295 456 Pfam Protein kinase domain 10 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0295 456 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0295 456 MobiDBLite consensus disorder prediction 402 434 - -
Vra5g0295 456 MobiDBLite consensus disorder prediction 306 358 - -
Vra5g0295 456 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0295 456 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0295 Vra-Chr5 2795055 2803530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0295 7 223 EF-hand Containing Proteins AT2G17890 24.889 7.62e-12 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vra5g0295 Pkinase 2.2e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0295 K02218 - gmx:100786777 832.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0295 5 2795055 2803530 Vra5g0295 5 2795055 2803530 ECH
Vra7g2580 7 46088189 46093731 Vra5g0295 5 2795055 2803530 PCT