Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0289 ATGGAGAATCACAAGATGGTAGCATCGGTGTCTGTTAAGGAGGAGATAGACAATAACCTTGCGGTGCAGGAAGAGGAAGATGTAGCAGATGTGGGTTCCAGCATGACCTTGGAAAGGGTCGCTGCAGCTAAGAAATTCATTGAAGACCATTATAGGTCTCAGATGAAACTCATCCAACAACGCAAAGAGAGGCGGTTAGAGCTAGAACAGAAGTTAGCATCTGCTCGTGTACCAAAAGAGGAACAGATCAATCAATTGAAGGATTTAGAGAGCAAGGAAACCGAGTTTATGCGGTTAAAAAGACACAAAATATGTGTTGATGATTTTGATCTTCTAACCATTATTGGGAGGGGAGCCTTTGGGGAGGTAACACTCTGTCGGGAAAAAACATCAGGTAATATATATGCCATGAAAAAGTTGAAAAAATCTGAAATGCTCAGCAGGGGACAGGTCGAGCATGTTAGAGCTGAAAGGAATGTACTTGCAGAAGTTGCCAGTGATTGCATTGTGAAACTCTATTACTCTTTTCAAGATGATGAACACTTATATCTCATAATGGAATATTTGCCCGGTGGTGATATAATGACTTTGTTGATGCGGGAAGAAACTTTGACTGAAACTGTGGCTAGATTTTACATTGCCCAGAGTGTTTTGGCCATAGAATCTATTCATAAACATAACTACATCCACAGAGATATAAAACCTGACAACCTTCTATTGGACAAAAACGGTCACATGAAGCTATCTGATTTTGGTCTGTGCAAGCCACTTGACTGCTCAAGCCTATCATCTATTCATGAAATGCAGATCCTCGATGATGGAAACTTATATGATACCATGGATGTTGATGGAGCCTTGCCAAATGGCAGAAATGGTAGGCGCTGGAAAAGTCCCTTGGAACAACTACAACATTGGCAAATTAATAGGAGGAAGCTGGCATTTTCCACTGTTGGAACTCCAGACTATATTGCCCCTGAAGTATTACTCAAAAAGGGTTACAGTGTGGAGTGTGACTGGTGGTCTCTTGGTGCTATAATGTATGAAATGCTAGTTGGATACCCTCCATTTTACTCTGATGATCCTGTAACAACATGCAGAAAGATCGTGAACTGGAAAAATCACTTGAAATTTCCAGAGGAGGCCAGATTGACACCTGAAGCCAAGGATCTAATATGCAGGTTGCTTTGTGGTGTTTCACATAGACTTGGCACTAATGGAGCAGATGAAATTAAAGCTCATCCTTGGTTCAGAGATGTCGTATGGGACAGGCTCTATGAAACGGAGGCAGCATTTAAACCACAAGTCTTTGGAGAGCTTGACACACAGAATTTTATGAAATTCGATGAAGTTGAACAACCAAAACCAGCTAGAACTGGATCTGGACCCTTCAGAAAGAAACTCTTAACTTCTCAAGATCTCAGTTTTGTTGGTTATACATATAAGAACTTTGCTGCTGTCAAGGGGATGCGTCAATCTAATGATTCAGATAGCATGTCACCACAGCGAACATCCATTGACTCCACACACAGTGATTCGGCAGTAAACTATTCACACTGA 1557 0.4136 MENHKMVASVSVKEEIDNNLAVQEEEDVADVGSSMTLERVAAAKKFIEDHYRSQMKLIQQRKERRLELEQKLASARVPKEEQINQLKDLESKETEFMRLKRHKICVDDFDLLTIIGRGAFGEVTLCREKTSGNIYAMKKLKKSEMLSRGQVEHVRAERNVLAEVASDCIVKLYYSFQDDEHLYLIMEYLPGGDIMTLLMREETLTETVARFYIAQSVLAIESIHKHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDCSSLSSIHEMQILDDGNLYDTMDVDGALPNGRNGRRWKSPLEQLQHWQINRRKLAFSTVGTPDYIAPEVLLKKGYSVECDWWSLGAIMYEMLVGYPPFYSDDPVTTCRKIVNWKNHLKFPEEARLTPEAKDLICRLLCGVSHRLGTNGADEIKAHPWFRDVVWDRLYETEAAFKPQVFGELDTQNFMKFDEVEQPKPARTGSGPFRKKLLTSQDLSFVGYTYKNFAAVKGMRQSNDSDSMSPQRTSIDSTHSDSAVNYSH* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0289 518 PANTHER SERINE/THREONINE-PROTEIN KINASE 22 517 - -
Vra5g0289 518 Gene3D Transferase(Phosphotransferase) domain 1 195 433 - -
Vra5g0289 518 ProSiteProfiles Protein kinase domain profile. 109 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0289 518 CDD STKc_NDR_like 107 481 - -
Vra5g0289 518 Gene3D Phosphorylase Kinase; domain 1 99 194 - -
Vra5g0289 518 SUPERFAMILY Protein kinase-like (PK-like) 106 474 IPR011009 -
Vra5g0289 518 SMART pkinase_C_6 417 482 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vra5g0289 518 MobiDBLite consensus disorder prediction 490 518 - -
Vra5g0289 518 PANTHER AGC (CAMP-DEPENDENT, CGMP-DEPENDENT AND PROTEIN KINASE C) KINASE FAMILY PROTEIN 22 517 - -
Vra5g0289 518 ProSiteProfiles AGC-kinase C-terminal domain profile. 417 490 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vra5g0289 518 SMART serkin_6 109 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0289 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672|GO:0006468
Vra5g0289 518 ProSitePatterns Protein kinases ATP-binding region signature. 115 138 IPR017441 GO:0005524
Vra5g0289 518 Pfam Protein kinase domain 111 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0289 518 Pfam Protein kinase domain 309 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0289 Vra-Chr5 2717101 2726551 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0289 22 492 AGC Kinase Gene Family AT4G33080 76.000 0.0 757
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Vra5g0289 Pkinase 8.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0289 K08790 - gmx:100811359 903.279