Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0286 ATGGAGGAAATAACTTCGACGGTTGCAGTGCCATTCGCACTTGGGAATTTAATACAAAAAGATCCATCAGTGACAACCCACATGGAGATAACTGGCCTAAAGCTCAGGGCAAACACTGCACCAGTATTAATATTAAATCCTGCTATTGAAAGTGAAAATCACACAGATAGTGGTCCTCAACCCCAAATTAAAGTGTCTTCAGAAGCAAAGAACAACCTTGTCTCAGAAATGGTAAGTCAAGGAGACAGTAATTGTTTCCATGCTGAAAACCTTAAGCAGGCAAGAAAAGAAAACCAATCATTGTTGGCTAAGGATTTTAAGTGTGAGCCTATCTCTCAGTCTGCTCCTGCTGACAAAACTAGTCCTTGTAGGGAGGAATCTTCTGTTTCTGTGGCTAATTGTTGTGAAATAAGTTCACGTATCACTATAAAGGTTGATGATAACACAGTTCATGGAAGGGAAGGTTTGACTGAGCCGCCAGGTGCAGCTATTGAGCCTCTGCAGAACATGGTTTCTGTTGCTAGGGGACATGAGAGTGAAGATGGAAGTGGGTCAGATGAGTCTGATAAAAAACCACTTTCTGTGGTTCATGAGATGCCAGAGAAGGCAACATGCTTGGAATTGAGTGGTGCCATCAGTACTACCCCACTATGGGGTTGCTCATCGGTTTGTGGAAGGAGAGAGGAGATGGAAGATGCTATTGCTGTTAGGCCTCATCTTTTTCAAGCTCCTTCAATGATGGTAATGGATGATTATGTGAGTGAAAACACAAACTTTTCACCAGCCCACTTTTTTGGCGTGTACGATGGACATGGGGGCTGTCAGGTTGCCGATTACTGCCGGGAACATCTTCATTCAGTGTTGGTTGATGAGATAACAACTGCACAATCGAGTTTTGATGAACAGAATGGGAGAGAAAACTGGGAGAACCAATGGAAGAAGGCATTCTCCAATTGCTTTCACAAAGTAGATGATGAGGTTGGAGGGGTTGGTGAAGGTAATGGAGCAAGTTTTGAACCTCTTGCTTCTGAGGCTGTTGGCTCCACTGCTGTGGTTGCCCTTTTGACTCAAACTCACATAATAGTTGCAAACTGTGGAGATTCAAGAGCTGTCTTGTGTCGCGGAAAAGAAGCAATGCCATTGTCTGATGATCACAAACCAAATAGAGAAGATGAATGGGAAAGGATAGAAGCTTCAGGAGGAAGGGTCATACAATGGAATGGGTACCGAGTTCTAGGTGTTTTGGCAGTGTCAAGATCCATAGGTGACAGGTACTTAAAACCATGGGTAATTCCAGAGCCAGAAGTGAAGTGTATCCAAAGAGACAAAAACGATGAGTGCCTCATTCTGGCCAGTGATGGATTATGGGATGTCATGACAAATGAAGAAGCCTGTGACTTTGCAAGAAGGAGAATCCTTCTTTGGCATAAGAAGAATGGCAACAACTCATCATCACAACAAGGCCAAGGACCTGACCCTGCAGCTCAGTATGCTGCAGAGTATCTATCTAGACTTGCCCTTCAAAGAGGAAGCAAAGATAACATCTCTGTCATTGTTATAGACTTGAAGCCCCAAAGAAAATTCAAGAAAAAAGAATAA 1599 0.4328 MEEITSTVAVPFALGNLIQKDPSVTTHMEITGLKLRANTAPVLILNPAIESENHTDSGPQPQIKVSSEAKNNLVSEMVSQGDSNCFHAENLKQARKENQSLLAKDFKCEPISQSAPADKTSPCREESSVSVANCCEISSRITIKVDDNTVHGREGLTEPPGAAIEPLQNMVSVARGHESEDGSGSDESDKKPLSVVHEMPEKATCLELSGAISTTPLWGCSSVCGRREEMEDAIAVRPHLFQAPSMMVMDDYVSENTNFSPAHFFGVYDGHGGCQVADYCREHLHSVLVDEITTAQSSFDEQNGRENWENQWKKAFSNCFHKVDDEVGGVGEGNGASFEPLASEAVGSTAVVALLTQTHIIVANCGDSRAVLCRGKEAMPLSDDHKPNREDEWERIEASGGRVIQWNGYRVLGVLAVSRSIGDRYLKPWVIPEPEVKCIQRDKNDECLILASDGLWDVMTNEEACDFARRRILLWHKKNGNNSSSQQGQGPDPAAQYAAEYLSRLALQRGSKDNISVIVIDLKPQRKFKKKE* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0286 532 Pfam Protein phosphatase 2C 221 515 IPR001932 -
Vra5g0286 532 CDD PP2Cc 219 522 IPR001932 -
Vra5g0286 532 SMART PP2C_SIG_2 250 522 IPR001932 -
Vra5g0286 532 ProSiteProfiles PPM-type phosphatase domain profile. 217 522 IPR001932 -
Vra5g0286 532 ProSitePatterns PPM-type phosphatase domain signature. 264 272 IPR000222 GO:0043169
Vra5g0286 532 SMART PP2C_4 207 520 IPR001932 -
Vra5g0286 532 Gene3D - 209 532 IPR036457 -
Vra5g0286 532 SUPERFAMILY PP2C-like 215 524 IPR036457 -
Vra5g0286 532 PANTHER PROTEIN PHOSPHATASE 2C ABI2-LIKE PROTEIN 103 532 - -
Vra5g0286 532 PANTHER ALPHABET, ISOFORM E-RELATED 103 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0286 Vra-Chr5 2686256 2689912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0286 216 531 PP2C-type Phosphatase Gene Family AT1G17550 59.877 5.10e-138 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0286 K14497 - gmx:100812974 796.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0286 5 2686256 2689912 Vra5g0286 5 2686256 2689912 ECH
Vra7g2591 7 46190701 46194447 Vra5g0286 5 2686256 2689912 PCT