Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0285 ATGAAGAAAGGGAGCTTAAGCTCCGGTCTCAAACTCACTGTTCCTGCATCTGATTGGGGTTCATTTACCAAGTTTTTGTCTGAGTCTGAAAGTGAAACGTTCAAGGCAGGGGACTTGCTTGTCGACAAGGAAGGTGTTCGAGTTGTTTCTGAGAAGGAAGTGGAAGCTCCACCACCAATCACGCCACTAGACAACCAGTTGAATCTGGCAGATATTGATACAATCAAAGTGATTGGAAAAGGAAATGGAGGGATAGTGCAATTGGTGCAACACAAATGGACTAATCAATTTTTTGCATTGAAGGAAATTCATATGAATATTGAGGAGCCTATTCACAGGCAGATAGCACTTGAGCTAAAAATTAATCAATCAGCACAATGTCCTTATGTTGTTGTCTGCTACCAGTCATTCTACCATAATGGTGTCATATCAATCATATTTGAGTACATGGACGGAGGGTCCTTAGAAGATCTTCTGAACAAAGTTAAAAAAATTCCAGAGTCATATCTTGCTGCCATCTGCAAGCAGGTGCTGAAGGGTTTAATGTATCTTCACCATGAAAAATACATTATCCACAGGGACTTAAAACCTTCTAATCTGCTGATAAATCATAGAGGGGAGGTAAAGATTACTGACTTTGGTGTAAGCATAATCATGGAAAATACATCTGGTCAAGCAAATACTTTCATTGGCACACACAGCTATATGTCTCCAGAGAGAATCACTACTAACCAGAGTGGCTACGACTACAAAAGTGACATATGGAGCTTGGGACTGATTTTGCTCAAGTGTGCCACGGGGCAGTTTCCATATACACCACCAGATCAACGCGAAGGATGGGAAAATATTTTCCAGCTTATTGAAGTCATTGTTGAAAAACCTTCCCCCACTGCTCCACCAGAAGATTTTTCTCCAGAATTTTGCTCATTTATCTCAGCATGTTTACAGAAAAATCCAAGAGATAGACCGTCTGCTCGTGACCTTATAAACCATCCTTTTATCAAATTGTATGAGGACTTGAATGTGGATCTTTCAACTTATTTCTACAACGCAGGATCTACACTTGCAACCATATAG 1077 0.403 MKKGSLSSGLKLTVPASDWGSFTKFLSESESETFKAGDLLVDKEGVRVVSEKEVEAPPPITPLDNQLNLADIDTIKVIGKGNGGIVQLVQHKWTNQFFALKEIHMNIEEPIHRQIALELKINQSAQCPYVVVCYQSFYHNGVISIIFEYMDGGSLEDLLNKVKKIPESYLAAICKQVLKGLMYLHHEKYIIHRDLKPSNLLINHRGEVKITDFGVSIIMENTSGQANTFIGTHSYMSPERITTNQSGYDYKSDIWSLGLILLKCATGQFPYTPPDQREGWENIFQLIEVIVEKPSPTAPPEDFSPEFCSFISACLQKNPRDRPSARDLINHPFIKLYEDLNVDLSTYFYNAGSTLATI* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0285 358 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 1 358 - -
Vra5g0285 358 Pfam Protein kinase domain 74 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0285 358 ProSiteProfiles Protein kinase domain profile. 72 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0285 358 SMART serkin_6 72 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0285 358 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Vra5g0285 358 SUPERFAMILY Protein kinase-like (PK-like) 70 342 IPR011009 -
Vra5g0285 358 Gene3D Transferase(Phosphotransferase) domain 1 152 354 - -
Vra5g0285 358 Gene3D Phosphorylase Kinase; domain 1 46 151 - -
Vra5g0285 358 PANTHER MAP KINASE KINASE 1 358 - -
Vra5g0285 358 CDD PKc_MAPKK_plant_like 70 338 - -
Vra5g0285 358 ProSitePatterns Protein kinases ATP-binding region signature. 78 101 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0285 Vra-Chr5 2681194 2686145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0285 28 355 MAP Kinase Kinase Gene Family AT4G26070 64.329 9.69e-162 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Vra5g0285 Pkinase 6e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0285 K20603 - gmx:100789241 619.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0285 5 2681194 2686145 Vra5g0285 5 2681194 2686145 ECH
Vra7g2592 7 46194582 46200138 Vra5g0285 5 2681194 2686145 PCT