Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0279 ATGGACAGTGGCGGCCACTACAACCCCCGCACTGTCGAAGAGGTTTTCCGGGACTTCAAGGGCCGCAGGGCTGGCATGATCAAAGCCCTTACCACTGATGTGGAGGAGTTTTATCAGCAGTGCGATCCTGAAAAGGAGAACCTATGTCTATATGGATTCCCCAATGAACAATGGGAAGTTAATTTGCCAGCTGAAGAAGTTCCTCCAGAACTTCCCGAACCTGCATTGGGCATAAACTTTGCTAGGGATGGGATGCAAGAAAAGGACTGGTTATCTTTAGTTGCTGTTCACAGTGATGCATGGCTACAGTCAGTGGCTTTCTACTTTGGAGCGAGATTTGGTTTTGATAAAGCTGACAGGAAACGCCTGTTCACTATGATTAATGATCTGCCTACTATATTCGAGGTCGTAACTGGATCTGCAATGAAACAGGCAAAGGAGAAGTCAACAGACCGCAACAGCAGCAAATCAAAGTCCGGTTCAAAACGAGGATCTGAATCTGTGAAGTATGTAAAACAAGAAGTTAAGGAGGAGGAGGTATTGGACGAAGAAGTAGACGAGGAACACGGAGAGACCTTGTGTGGCGCTTGTGGGGAGAACTATGCATCCGATGAGTTCTGGATTTGTTGCGACATATGCGAGAAGTGGTTTCATGGCAAGTGTGTGAAAATCACTCCTGCCCGTGCTGAGCACATCAAACACTACAAGTGCCCCTCATGCAGCAACAAGAGAGCAAAACCTTGA 744 0.4718 MDSGGHYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLQSVAFYFGARFGFDKADRKRLFTMINDLPTIFEVVTGSAMKQAKEKSTDRNSSKSKSGSKRGSESVKYVKQEVKEEEVLDEEVDEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKHYKCPSCSNKRAKP* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0279 247 ProSiteProfiles Zinc finger PHD-type profile. 191 243 IPR019787 -
Vra5g0279 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 184 242 IPR013083 -
Vra5g0279 247 MobiDBLite consensus disorder prediction 144 171 - -
Vra5g0279 247 ProSitePatterns Zinc finger PHD-type signature. 194 240 IPR019786 -
Vra5g0279 247 SMART PHD_3 193 241 IPR001965 -
Vra5g0279 247 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Vra5g0279 247 Pfam PHD-finger 194 243 IPR019787 -
Vra5g0279 247 PANTHER CPG BINDING PROTEIN 3 247 IPR045104 GO:0006355|GO:0042393
Vra5g0279 247 SUPERFAMILY FYVE/PHD zinc finger 186 245 IPR011011 -
Vra5g0279 247 CDD PHD_AL_plant 193 243 IPR044104 -
Vra5g0279 247 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 3 247 - -
Vra5g0279 247 MobiDBLite consensus disorder prediction 145 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0279 Vra-Chr5 2627425 2640379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0279 7 246 Alfin-like Transcription Factor Family AT3G42790 74.380 6.29e-120 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Vra5g0279 Alfin 8.2e-70 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0279 - - gmx:100170699 451.44