Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0278 ATGCTCACGTGCATAGCACGTTCCAAGAAACTCGACTCGGAGAGCGATGATCCGAGTTCGCGGGGGGCCAAATCGCTAACGTGTCAGCTGAAGGAGATGGCACTGAAGGCTTCGGGATCGTACAAGCAGTGCGGTCCGTGCGCGCCGCCGCATAGTCGACTGAGTCGCGGTGGCGAGTCCGATTCGGAGTCGTCGCGGCGGCGGTGGGGGAAGGAGATGGAGGCTCGGTTGAAGGGGATTTCGAGCGGCGAGGGTACGCCGAGCTCCAGCGGGAGGAGAATGGTGGTAGTCCTGGAAGAGGAGGCCGAGCCGAAGGAGTGGGTGGCGCAGGTGGAGCCCGGCGTTTTGATCACGTTCGTATCGCTTCCGCGTGGCGGGAACCATCTCAAACGGATTCGGTTCAGTCGCGATATATTTAACAAATGGCAAGCTCAGAGATGGTGGGCAGAGAATTACGACAAGGTGATGGAACTTTACAATGTTCAAAGGCTTAACCGGCAAGCTATCCCTCTTCCAACTCCACCAAGGTCTGAAGACGAGAGCTCAAAGCGTGAATCAATGGAAGAGATCCCGGTGACACCTCCGCTGAGCAGGGAAAGGCCACCGTGTAATATATTCCGTGGAGGAGGAGGAGGAGTGGCAATGGGGTACTCATTCTCTGATTCGTTCGATCAGCATTCAATGCAATCCCGGCATTACTATGATCCGAGTGGTGTGAACTCAACCCCGAAGGTGTCGACCATTAGTGCTGCTGCGAAGACAGATATCTCATCATCAATGGATGCTGATGCTTCAATCAGAAGTAGCTCATCAAGGGAAGCTGATCGCTCCGGCGATTTATCAATCAGTAATGCCAGTGACCTCGATGCTGAATGGGTCGAGCAGGATGAACCTGGGGTTTACATTACCATCAGAGCTCTCCCTGGTGGCAAAAGGGAGCTCAGACGAGTAAGGTTCAGTCGAGAAAAGTTTGGAGAGGTGTATGCTAGACTGTGGTGGGAAGAGAACCGTGCCAGAATACATGAACAGTACTTGTGA 1038 0.5405 MLTCIARSKKLDSESDDPSSRGAKSLTCQLKEMALKASGSYKQCGPCAPPHSRLSRGGESDSESSRRRWGKEMEARLKGISSGEGTPSSSGRRMVVVLEEEAEPKEWVAQVEPGVLITFVSLPRGGNHLKRIRFSRDIFNKWQAQRWWAENYDKVMELYNVQRLNRQAIPLPTPPRSEDESSKRESMEEIPVTPPLSRERPPCNIFRGGGGGVAMGYSFSDSFDQHSMQSRHYYDPSGVNSTPKVSTISAAAKTDISSSMDADASIRSSSSREADRSGDLSISNASDLDAEWVEQDEPGVYITIRALPGGKRELRRVRFSREKFGEVYARLWWEENRARIHEQYL* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0278 345 MobiDBLite consensus disorder prediction 1 24 - -
Vra5g0278 345 MobiDBLite consensus disorder prediction 40 71 - -
Vra5g0278 345 MobiDBLite consensus disorder prediction 56 71 - -
Vra5g0278 345 Pfam Transcription factor BRX N-terminal domain 24 47 IPR027988 -
Vra5g0278 345 PANTHER PROTEIN BREVIS RADIX-LIKE 4 1 345 - -
Vra5g0278 345 MobiDBLite consensus disorder prediction 169 203 - -
Vra5g0278 345 ProSiteProfiles BRX domain profile. 105 160 IPR013591 -
Vra5g0278 345 Pfam Transcription factor regulating root and shoot growth via Pin3 290 344 IPR013591 -
Vra5g0278 345 Pfam Transcription factor regulating root and shoot growth via Pin3 105 159 IPR013591 -
Vra5g0278 345 ProSiteProfiles BRX domain profile. 290 345 IPR013591 -
Vra5g0278 345 MobiDBLite consensus disorder prediction 256 282 - -
Vra5g0278 345 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 345 IPR044532 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0278 Vra-Chr5 2588608 2593320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0278 1 345 Major Intrinsic Protein MIP AT1G31880 43.077 1.87e-83 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0278 - - pvu:PHAVU_009G229100g 615.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0278 5 2588608 2593320 Vra5g0278 5 2588608 2593320 ECH
Vra7g2602 7 46281977 46287640 Vra5g0278 5 2588608 2593320 PCT