Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0276 ATGGGTGATGTTCTAAGCCCTTTCACAGTTTCATCTCCTCCTCCACCCTCTTCCTCTTCCGACAACAACAACAACAGCATGCCCATGTTGTACTACGGTCTTGTGGTGGTGGGAACCGCCGCCATAGTGTTGGCTGTATACAACGTTTTCCTCCTGAAACGCAGCCACTCGCGGTCGCAGCAGCCTCCGGGGTCGAGTCCCAATGGTGTGGGAACAAGAATTGAAGGGGTTTCGGAGATAACGAGGAGCATGGAGAACCGACAGAGAGAGTTGTTGTCGAGCTTCAAGTACAAGAGAGAAGAGGTGGCAAAAGAAAAAGAAGAGTTGGAAGATTTTGAGTGCCCCGTTTGCTTATCAGTTTACGAAGAAGGAGAAGAAGTGAGGAAGCTTCCACAGTGCAAACACTATTTCCACGTTCTTTGCATAGACATGTGGCTCTATTCTCACTTCGATTGCCCCATTTGTAGAACACCCGTTCTCGTCGGCCATCTCTCTCCGGTCGACGCCTTCATTGAATCCGGCGGCATCTCCTAG 534 0.5037 MGDVLSPFTVSSPPPPSSSSDNNNNSMPMLYYGLVVVGTAAIVLAVYNVFLLKRSHSRSQQPPGSSPNGVGTRIEGVSEITRSMENRQRELLSSFKYKREEVAKEKEELEDFECPVCLSVYEEGEEVRKLPQCKHYFHVLCIDMWLYSHFDCPICRTPVLVGHLSPVDAFIESGGIS* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0276 177 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Vra5g0276 177 PANTHER RING-H2 FINGER PROTEIN ATL52-LIKE 11 161 - -
Vra5g0276 177 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 161 IPR044675 -
Vra5g0276 177 SUPERFAMILY RING/U-box 104 161 - -
Vra5g0276 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 161 IPR013083 -
Vra5g0276 177 Pfam Ring finger domain 113 156 IPR001841 -
Vra5g0276 177 MobiDBLite consensus disorder prediction 1 23 - -
Vra5g0276 177 SMART ring_2 114 155 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0276 Vra-Chr5 2569930 2570990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0276 15 159 C3H Transcription Factor Family AT1G04360 30.000 3.80e-19 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0276 - - aprc:113852327 214.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2605 7 46318243 46319718 Vra5g0276 5 2569930 2570990 PCT